{"id":"https://openalex.org/W4313412849","doi":"https://doi.org/10.1109/bibm55620.2022.9995411","title":"Predicting Compound-Protein Interaction by Deepening the Systemic Background via Molecular Network Feature Embedding","display_name":"Predicting Compound-Protein Interaction by Deepening the Systemic Background via Molecular Network Feature Embedding","publication_year":2022,"publication_date":"2022-12-06","ids":{"openalex":"https://openalex.org/W4313412849","doi":"https://doi.org/10.1109/bibm55620.2022.9995411"},"language":"en","primary_location":{"id":"doi:10.1109/bibm55620.2022.9995411","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm55620.2022.9995411","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100452702","display_name":"Han Wang","orcid":"https://orcid.org/0000-0002-4302-1886"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Han Wang","raw_affiliation_strings":["Institute of Computational Biology, Northeast Normal University,School of Information Science and Technology,Changchun,China","School of Information Science and Technology, Institute of Computational Biology, Northeast Normal University, Changchun, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computational Biology, Northeast Normal University,School of Information Science and Technology,Changchun,China","institution_ids":["https://openalex.org/I184983240"]},{"raw_affiliation_string":"School of Information Science and Technology, Institute of Computational Biology, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057241116","display_name":"Hangxu Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hangxu Zhu","raw_affiliation_strings":["Institute of Computational Biology, Northeast Normal University,School of Information Science and Technology,Changchun,China","School of Information Science and Technology, Institute of Computational Biology, Northeast Normal University, Changchun, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computational Biology, Northeast Normal University,School of Information Science and Technology,Changchun,China","institution_ids":["https://openalex.org/I184983240"]},{"raw_affiliation_string":"School of Information Science and Technology, Institute of Computational Biology, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100362646","display_name":"Wenhao Li","orcid":"https://orcid.org/0009-0009-6173-3535"},"institutions":[{"id":"https://openalex.org/I184983240","display_name":"Northeast Normal University","ror":"https://ror.org/02rkvz144","country_code":"CN","type":"education","lineage":["https://openalex.org/I184983240"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenhao Li","raw_affiliation_strings":["Institute of Computational Biology, Northeast Normal University,School of Information Science and Technology,Changchun,China","School of Information Science and Technology, Institute of Computational Biology, Northeast Normal University, Changchun, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computational Biology, Northeast Normal University,School of Information Science and Technology,Changchun,China","institution_ids":["https://openalex.org/I184983240"]},{"raw_affiliation_string":"School of Information Science and Technology, Institute of Computational Biology, Northeast Normal University, Changchun, China","institution_ids":["https://openalex.org/I184983240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100347765","display_name":"Ming Liu","orcid":"https://orcid.org/0000-0002-1114-1728"},"institutions":[{"id":"https://openalex.org/I4385474403","display_name":"Changchun University of Technology","ror":"https://ror.org/052pakb34","country_code":"CN","type":"education","lineage":["https://openalex.org/I4385474403"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Liu","raw_affiliation_strings":["Changchun University of Technology,School of Mathematics and Statistics, School of Computer Science and Engineering,Changchun,China","School of Mathematics and Statistics, School of Computer Science and Engineering, Changchun University of Technology, Changchun, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Changchun University of Technology,School of Mathematics and Statistics, School of Computer Science and Engineering,Changchun,China","institution_ids":["https://openalex.org/I4385474403"]},{"raw_affiliation_string":"School of Mathematics and Statistics, School of Computer Science and Engineering, Changchun University of Technology, Changchun, China","institution_ids":["https://openalex.org/I4385474403"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100425398","display_name":"Li Zhang","orcid":"https://orcid.org/0000-0001-5029-2134"},"institutions":[{"id":"https://openalex.org/I4385474403","display_name":"Changchun University of Technology","ror":"https://ror.org/052pakb34","country_code":"CN","type":"education","lineage":["https://openalex.org/I4385474403"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Zhang","raw_affiliation_strings":["Changchun University of Technology,School of Mathematics and Statistics, School of Computer Science and Engineering,Changchun,China","School of Mathematics and Statistics, School of Computer Science and Engineering, Changchun University of Technology, Changchun, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Changchun University of Technology,School of Mathematics and Statistics, School of Computer Science and Engineering,Changchun,China","institution_ids":["https://openalex.org/I4385474403"]},{"raw_affiliation_string":"School of Mathematics and Statistics, School of Computer Science and Engineering, Changchun University of Technology, Changchun, China","institution_ids":["https://openalex.org/I4385474403"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082428303","display_name":"Dong Xu","orcid":"https://orcid.org/0000-0002-4809-0514"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dong Xu","raw_affiliation_strings":["University of Missouri,Bond Life Sciences Center,Department of Electrical Engineering and Computer Science,Columbia,USA","Department of Electrical Engineering and Computer Science, Bond Life Sciences Center, University of Missouri, Columbia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Missouri,Bond Life Sciences Center,Department of Electrical Engineering and Computer Science,Columbia,USA","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, Bond Life Sciences Center, University of Missouri, Columbia, USA","institution_ids":["https://openalex.org/I76835614"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.4976,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.83323013,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"346","last_page":"353"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9534000158309937,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.7443317770957947},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6877790689468384},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.687610924243927},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.6411367058753967},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5046259164810181},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48768508434295654},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.44736528396606445},{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.42096707224845886},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3841632604598999},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.37367647886276245},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11698856949806213},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.10829177498817444},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.08296376466751099}],"concepts":[{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.7443317770957947},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6877790689468384},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.687610924243927},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.6411367058753967},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5046259164810181},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48768508434295654},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.44736528396606445},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.42096707224845886},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3841632604598999},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.37367647886276245},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11698856949806213},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.10829177498817444},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.08296376466751099},{"id":"https://openalex.org/C548081761","wikidata":"https://www.wikidata.org/wiki/Q180388","display_name":"Waste management","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm55620.2022.9995411","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm55620.2022.9995411","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.8100000023841858}],"awards":[],"funders":[{"id":"https://openalex.org/F4320326270","display_name":"Education Department of Jilin Province","ror":"https://ror.org/05782e512"},{"id":"https://openalex.org/F4320335953","display_name":"Jilin Scientific and Technological Development Program","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":73,"referenced_works":["https://openalex.org/W1501531009","https://openalex.org/W1522301498","https://openalex.org/W1614298861","https://openalex.org/W2009313526","https://openalex.org/W2018796817","https://openalex.org/W2093221728","https://openalex.org/W2100672820","https://openalex.org/W2108069034","https://openalex.org/W2109255472","https://openalex.org/W2109628770","https://openalex.org/W2122111042","https://openalex.org/W2137476097","https://openalex.org/W2148145769","https://openalex.org/W2153838454","https://openalex.org/W2157331557","https://openalex.org/W2194775991","https://openalex.org/W2294516783","https://openalex.org/W2336040088","https://openalex.org/W2567070169","https://openalex.org/W2753953057","https://openalex.org/W2785947426","https://openalex.org/W2786016794","https://openalex.org/W2807792492","https://openalex.org/W2860192827","https://openalex.org/W2899788782","https://openalex.org/W2911871527","https://openalex.org/W2945027804","https://openalex.org/W2952522777","https://openalex.org/W2962756421","https://openalex.org/W2967025868","https://openalex.org/W2978484973","https://openalex.org/W3015430079","https://openalex.org/W3024124794","https://openalex.org/W3028589594","https://openalex.org/W3038021691","https://openalex.org/W3041467169","https://openalex.org/W3080877256","https://openalex.org/W3081474706","https://openalex.org/W3096561213","https://openalex.org/W3107527779","https://openalex.org/W3112951420","https://openalex.org/W3113769443","https://openalex.org/W3113831423","https://openalex.org/W3116202926","https://openalex.org/W3116452748","https://openalex.org/W3125046749","https://openalex.org/W3126587708","https://openalex.org/W3127133144","https://openalex.org/W3128972055","https://openalex.org/W3134958209","https://openalex.org/W3149182378","https://openalex.org/W3151357660","https://openalex.org/W3153023842","https://openalex.org/W3156321139","https://openalex.org/W3158827626","https://openalex.org/W3165393082","https://openalex.org/W3165640073","https://openalex.org/W3167522287","https://openalex.org/W3189831819","https://openalex.org/W3192138633","https://openalex.org/W3194156258","https://openalex.org/W3206044173","https://openalex.org/W3207471891","https://openalex.org/W3209981042","https://openalex.org/W3215068401","https://openalex.org/W4211219865","https://openalex.org/W4239510810","https://openalex.org/W4285731555","https://openalex.org/W6631190155","https://openalex.org/W6636510571","https://openalex.org/W6680132778","https://openalex.org/W6731370813","https://openalex.org/W6806899305"],"related_works":["https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4255531208","https://openalex.org/W4396858017","https://openalex.org/W4400165188","https://openalex.org/W4206422705","https://openalex.org/W4320009247","https://openalex.org/W3186872001"],"abstract_inverted_index":{"Identifying":[0],"compound-protein":[1],"interactions":[2],"(CPI)":[3],"is":[4],"crucial":[5],"for":[6,106,136,157],"drug":[7,9,158],"screening,":[8],"repurposing,":[10],"and":[11,28,42,89,142],"combination":[12],"therapy":[13],"studies.":[14],"The":[15,31,112],"performance":[16],"of":[17,48,58,92],"CPI":[18,59,93,108],"prediction":[19,33,96,145],"depends":[20],"heavily":[21],"on":[22,109],"the":[23,46,55,67,80,119,127,132,144,148],"features":[24,57,91],"extracted":[25],"from":[26],"compounds":[27],"target":[29],"proteins.":[30],"existing":[32,68,104],"methods":[34,105],"use":[35],"different":[36],"feature":[37,50],"combinations,":[38],"but":[39],"both":[40],"molecular-based":[41],"network-based":[43],"models":[44],"have":[45],"problem":[47],"incomplete":[49],"representations.":[51],"Therefore,":[52],"completely":[53],"integrating":[54],"relevant":[56],"would":[60],"be":[61],"an":[62],"effective":[63],"way":[64],"to":[65,94,126,134],"solve":[66],"problem.":[69],"This":[70,150],"study":[71],"proposed":[72],"a":[73],"novel":[74],"model":[75,101,133],"named":[76],"MCPI,":[77],"which":[78],"integrated":[79],"PPI":[81],"(protein-protein":[82],"interaction)":[83,87],"network,":[84,88],"CCI":[85],"(compound-compound":[86],"structure":[90],"improve":[95],"performance.":[97],"We":[98],"compared":[99],"our":[100],"with":[102],"other":[103],"predicting":[107],"public":[110],"datasets.":[111],"experimental":[113],"results":[114,146],"showed":[115],"that":[116],"MCPI":[117],"outperformed":[118],"peer":[120],"methods.":[121],"In":[122],"addition,":[123],"in":[124],"response":[125],"SARS-CoV-2":[128],"pandemic,":[129],"we":[130],"applied":[131],"search":[135],"potential":[137,155],"inhibitors":[138],"among":[139],"FDA-approved":[140],"drugs":[141],"validated":[143],"through":[147],"literature.":[149],"work":[151],"may":[152],"also":[153],"provide":[154],"guidance":[156],"development.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
