{"id":"https://openalex.org/W4313525427","doi":"https://doi.org/10.1109/bibm55620.2022.9995374","title":"K-Mer Fingerprinting with RNN to predict MICs for K. pneumoniae","display_name":"K-Mer Fingerprinting with RNN to predict MICs for K. pneumoniae","publication_year":2022,"publication_date":"2022-12-06","ids":{"openalex":"https://openalex.org/W4313525427","doi":"https://doi.org/10.1109/bibm55620.2022.9995374"},"language":"en","primary_location":{"id":"doi:10.1109/bibm55620.2022.9995374","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9995374","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081800708","display_name":"Cory Kromer-Edwards","orcid":"https://orcid.org/0000-0002-5804-8520"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Cory Kromer-Edwards","raw_affiliation_strings":["University of Iowa,Computer Science,Iowa City,United States","Computer Science, University of Iowa, Iowa City, United States"],"affiliations":[{"raw_affiliation_string":"University of Iowa,Computer Science,Iowa City,United States","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Computer Science, University of Iowa, Iowa City, United States","institution_ids":["https://openalex.org/I126307644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102992721","display_name":"Mariana Castanheira","orcid":null},"institutions":[{"id":"https://openalex.org/I4210121169","display_name":"JMI Laboratories","ror":"https://ror.org/02qv6pw23","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210121169"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mariana Castanheira","raw_affiliation_strings":["JMI Laboratories,North Liberty,United Statess","JMI Laboratories, North Liberty, United Statess"],"affiliations":[{"raw_affiliation_string":"JMI Laboratories,North Liberty,United Statess","institution_ids":["https://openalex.org/I4210121169"]},{"raw_affiliation_string":"JMI Laboratories, North Liberty, United Statess","institution_ids":["https://openalex.org/I4210121169"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090034482","display_name":"Suely Oliveira","orcid":"https://orcid.org/0000-0003-4987-5353"},"institutions":[{"id":"https://openalex.org/I126307644","display_name":"University of Iowa","ror":"https://ror.org/036jqmy94","country_code":"US","type":"education","lineage":["https://openalex.org/I126307644"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suely Oliveira","raw_affiliation_strings":["University of Iowa,Computer Science,Iowa City,United States","Computer Science, University of Iowa, Iowa City, United States"],"affiliations":[{"raw_affiliation_string":"University of Iowa,Computer Science,Iowa City,United States","institution_ids":["https://openalex.org/I126307644"]},{"raw_affiliation_string":"Computer Science, University of Iowa, Iowa City, United States","institution_ids":["https://openalex.org/I126307644"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081800708"],"corresponding_institution_ids":["https://openalex.org/I126307644"],"apc_list":null,"apc_paid":null,"fwci":4.4444,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.88888889,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"1927","last_page":"1932"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10195","display_name":"Antimicrobial Resistance in Staphylococcus","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antimicrobial","display_name":"Antimicrobial","score":0.7048435211181641},{"id":"https://openalex.org/keywords/minimum-inhibitory-concentration","display_name":"Minimum inhibitory concentration","score":0.6639645099639893},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3957568407058716},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38087835907936096},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.34811365604400635},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.23811444640159607},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21506404876708984}],"concepts":[{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.7048435211181641},{"id":"https://openalex.org/C176947019","wikidata":"https://www.wikidata.org/wiki/Q597889","display_name":"Minimum inhibitory concentration","level":3,"score":0.6639645099639893},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3957568407058716},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38087835907936096},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.34811365604400635},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.23811444640159607},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21506404876708984}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm55620.2022.9995374","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9995374","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5299999713897705,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W26641785","https://openalex.org/W1505626160","https://openalex.org/W1978732934","https://openalex.org/W2023874768","https://openalex.org/W2758908936","https://openalex.org/W2771362836","https://openalex.org/W2800388620","https://openalex.org/W2951274106","https://openalex.org/W3005133755","https://openalex.org/W3016845031","https://openalex.org/W3126166937","https://openalex.org/W3149549685","https://openalex.org/W3164636936","https://openalex.org/W3191207131","https://openalex.org/W3197417200","https://openalex.org/W4385484764","https://openalex.org/W6768599958","https://openalex.org/W6776182553","https://openalex.org/W6854695364"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2358368915","https://openalex.org/W2380741856","https://openalex.org/W2348658803","https://openalex.org/W2033914206","https://openalex.org/W2495535051","https://openalex.org/W2305699482","https://openalex.org/W2042327336","https://openalex.org/W2188654299"],"abstract_inverted_index":{"Antimicrobial":[0],"Susceptibility":[1],"Testing":[2],"(AST)":[3],"is":[4,12],"necessary":[5],"to":[6,16,33,53,91],"properly":[7],"identify":[8],"if":[9],"a":[10,17,44,50,69],"pathogen":[11],"susceptible":[13],"or":[14],"resistant":[15],"given":[18],"antimicrobial":[19,38],"agent.":[20],"However,":[21],"current":[22],"methods":[23],"utilizing":[24],"Minimum":[25],"Inhibitory":[26],"Concentration":[27],"(MIC)":[28],"testing":[29],"are":[30],"slow,":[31],"leading":[32],"delay":[34],"in":[35,89],"implementing":[36],"effective":[37],"therapy.":[39],"Machine":[40],"Learning":[41],"(ML)":[42],"offers":[43],"faster":[45],"alternative.":[46],"This":[47],"paper":[48],"proposes":[49],"novel":[51],"way":[52],"predict":[54],"MIC":[55],"values":[56],"by":[57,102],"fingerprinting":[58],"isolates":[59],"using":[60,68],"three":[61],"different":[62],"K-Mer":[63],"count":[64],"sizes,":[65],"rather":[66],"than":[67],"single,":[70],"large":[71],"K-mer,":[72],"of":[73,87],"three,":[74],"four,":[75],"and":[76,98],"five.":[77],"Results":[78],"from":[79],"our":[80],"models":[81,94],"achieved":[82,96],"an":[83],"average":[84],"F1":[85,100],"score":[86],"0.75":[88],"comparison":[90],"other":[92],"ML":[93],"that":[95],"0.67":[97],"0.58":[99],"scores":[101],"previous":[103],"approaches.":[104]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3}],"updated_date":"2025-12-23T23:11:35.936235","created_date":"2025-10-10T00:00:00"}
