{"id":"https://openalex.org/W4313527201","doi":"https://doi.org/10.1109/bibm55620.2022.9995331","title":"BioNER-CFEM: Biomedical Named Entity Recognition Based on Character Feature Enhancement with Multimodal Method","display_name":"BioNER-CFEM: Biomedical Named Entity Recognition Based on Character Feature Enhancement with Multimodal Method","publication_year":2022,"publication_date":"2022-12-06","ids":{"openalex":"https://openalex.org/W4313527201","doi":"https://doi.org/10.1109/bibm55620.2022.9995331"},"language":"en","primary_location":{"id":"doi:10.1109/bibm55620.2022.9995331","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm55620.2022.9995331","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019605874","display_name":"Jinzhong Ning","orcid":"https://orcid.org/0000-0002-0771-9742"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jinzhong Ning","raw_affiliation_strings":["Dalian University of Technology,College of Computer Science and Technology,Dalian,China","College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,College of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000155122","display_name":"Jiru Li","orcid":"https://orcid.org/0009-0001-8093-9784"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiru Li","raw_affiliation_strings":["Dalian University of Technology,College of Computer Science and Technology,Dalian,China","College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,College of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051597671","display_name":"Zhihao Yang","orcid":"https://orcid.org/0000-0001-6186-2024"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihao Yang","raw_affiliation_strings":["Dalian University of Technology,College of Computer Science and Technology,Dalian,China","College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,College of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102795296","display_name":"Yuanyuan Sun","orcid":"https://orcid.org/0000-0002-3753-7640"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanyuan Sun","raw_affiliation_strings":["Dalian University of Technology,College of Computer Science and Technology,Dalian,China","College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,College of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100436099","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0003-1810-3019"},"institutions":[{"id":"https://openalex.org/I4210119119","display_name":"Beijing Administration Institute","ror":"https://ror.org/02mf18m55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210110145","https://openalex.org/I4210119119"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["Information Beijing Institute,Health Administration and Medical,Beijing,China","Health Administration and Medical, Information Beijing Institute, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Information Beijing Institute,Health Administration and Medical,Beijing,China","institution_ids":["https://openalex.org/I4210119119"]},{"raw_affiliation_string":"Health Administration and Medical, Information Beijing Institute, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100343699","display_name":"Yin Zhang","orcid":"https://orcid.org/0000-0001-6986-4227"},"institutions":[{"id":"https://openalex.org/I4210119119","display_name":"Beijing Administration Institute","ror":"https://ror.org/02mf18m55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210110145","https://openalex.org/I4210119119"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yin Zhang","raw_affiliation_strings":["Information Beijing Institute,Health Administration and Medical,Beijing,China","Health Administration and Medical, Information Beijing Institute, Beijing, China"],"affiliations":[{"raw_affiliation_string":"Information Beijing Institute,Health Administration and Medical,Beijing,China","institution_ids":["https://openalex.org/I4210119119"]},{"raw_affiliation_string":"Health Administration and Medical, Information Beijing Institute, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023931221","display_name":"Hongfei Lin","orcid":"https://orcid.org/0000-0003-0872-7688"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfei Lin","raw_affiliation_strings":["Dalian University of Technology,College of Computer Science and Technology,Dalian,China","College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,College of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100370523","display_name":"Jian Wang","orcid":"https://orcid.org/0000-0002-9849-7558"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Wang","raw_affiliation_strings":["Dalian University of Technology,College of Computer Science and Technology,Dalian,China","College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,College of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5019605874"],"corresponding_institution_ids":["https://openalex.org/I27357992"],"apc_list":null,"apc_paid":null,"fwci":0.1039,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.34200603,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"787","last_page":"790"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9793999791145325,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/character","display_name":"Character (mathematics)","score":0.7751353979110718},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7571641802787781},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.7031644582748413},{"id":"https://openalex.org/keywords/character-recognition","display_name":"Character recognition","score":0.6290122270584106},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5420937538146973},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.47233644127845764},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.40165388584136963},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.39583301544189453},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.0862574577331543},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.06783661246299744}],"concepts":[{"id":"https://openalex.org/C2780861071","wikidata":"https://www.wikidata.org/wiki/Q1062934","display_name":"Character (mathematics)","level":2,"score":0.7751353979110718},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7571641802787781},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.7031644582748413},{"id":"https://openalex.org/C2987247673","wikidata":"https://www.wikidata.org/wiki/Q167555","display_name":"Character recognition","level":3,"score":0.6290122270584106},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5420937538146973},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.47233644127845764},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.40165388584136963},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.39583301544189453},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0862574577331543},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.06783661246299744},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm55620.2022.9995331","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm55620.2022.9995331","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W2047782770","https://openalex.org/W2149369282","https://openalex.org/W2154142897","https://openalex.org/W2169099542","https://openalex.org/W2296283641","https://openalex.org/W2346452181","https://openalex.org/W2904442979","https://openalex.org/W2911489562","https://openalex.org/W2962902328","https://openalex.org/W2962906565","https://openalex.org/W2983180560","https://openalex.org/W3157876196","https://openalex.org/W4205631594","https://openalex.org/W4385245566","https://openalex.org/W6739901393","https://openalex.org/W6769607603"],"related_works":["https://openalex.org/W4251972423","https://openalex.org/W1503216044","https://openalex.org/W2393609567","https://openalex.org/W2369369044","https://openalex.org/W2354143083","https://openalex.org/W2372906645","https://openalex.org/W2892704491","https://openalex.org/W2106936331","https://openalex.org/W1985626581","https://openalex.org/W2294301082"],"abstract_inverted_index":{"Biomedical":[0],"named":[1,35],"entity":[2,36],"recognition":[3,37],"(Bio-NER)":[4],"is":[5],"an":[6],"essential":[7],"task":[8],"for":[9,92],"biomedical":[10,34],"information":[11],"extraction.":[12],"In":[13,63],"this":[14],"paper,":[15],"we":[16],"regard":[17],"word-level":[18],"features":[19,22],"and":[20,31],"character-level":[21],"as":[23],"two":[24,83],"different":[25],"modalities":[26],"from":[27],"a":[28,33],"novel":[29],"perspective":[30],"propose":[32],"model":[38],"based":[39,68],"on":[40,106,118],"character":[41],"feature":[42],"enhancement":[43],"with":[44,103],"multimodal":[45],"method":[46],"(called":[47],"BioNER-CFEM).":[48],"BioNER-CFEM":[49,91],"can":[50,72],"not":[51],"only":[52],"capture":[53],"interactions":[54,60],"between":[55],"modalities,":[56],"but":[57],"also":[58],"learn":[59],"within":[61],"modalities.":[62],"addition,":[64],"our":[65],"proposed":[66],"cross-attention":[67],"sparse":[69],"selection":[70],"mechanism":[71],"effectively":[73],"alleviate":[74],"the":[75,78,82,88,93],"noise":[76],"in":[77],"interaction":[79],"process":[80],"of":[81,90],"\u2018modalities\u2019.":[84],"Experimental":[85],"results":[86],"show":[87],"effectiveness":[89],"Bio-NER":[94,109],"task:":[95],"it":[96],"achieves":[97],"performance":[98],"boost":[99],"over":[100],"SOTA":[101],"models":[102],"competitive":[104],"efficiency":[105],"all":[107],"six":[108],"datasets,":[110],"i.e.,":[111],"$+0.89,":[112],"+0.64,":[113],"+0.40$,":[114],"$+1.40,":[115],"+5.57,":[116],"+2.81$":[117],"NCBI-Disease,":[119],"BC5CDR-Disease,":[120],"BC5CDR-Chem,":[121],"BC2GM,":[122],"JNLPBA,":[123],"BC4CHEMD,":[124],"respectively.":[125]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
