{"id":"https://openalex.org/W4313525630","doi":"https://doi.org/10.1109/bibm55620.2022.9995279","title":"Exhaustive In-silico Simulation of Single Amino Acid Insertion and Deletion Mutations","display_name":"Exhaustive In-silico Simulation of Single Amino Acid Insertion and Deletion Mutations","publication_year":2022,"publication_date":"2022-12-06","ids":{"openalex":"https://openalex.org/W4313525630","doi":"https://doi.org/10.1109/bibm55620.2022.9995279"},"language":"en","primary_location":{"id":"doi:10.1109/bibm55620.2022.9995279","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9995279","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040587306","display_name":"Alistair Turcan","orcid":null},"institutions":[{"id":"https://openalex.org/I52669646","display_name":"Western Washington University","ror":"https://ror.org/05wn7r715","country_code":"US","type":"education","lineage":["https://openalex.org/I52669646"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alistair Turcan","raw_affiliation_strings":["Western Washington University,Dept. of Computer Science,Bellingham,WA,USA","Dept. of Computer Science, Western Washington University, Bellingham, WA, USA"],"affiliations":[{"raw_affiliation_string":"Western Washington University,Dept. of Computer Science,Bellingham,WA,USA","institution_ids":["https://openalex.org/I52669646"]},{"raw_affiliation_string":"Dept. of Computer Science, Western Washington University, Bellingham, WA, USA","institution_ids":["https://openalex.org/I52669646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046107331","display_name":"Grant M Chou","orcid":"https://orcid.org/0009-0001-3003-2631"},"institutions":[{"id":"https://openalex.org/I52669646","display_name":"Western Washington University","ror":"https://ror.org/05wn7r715","country_code":"US","type":"education","lineage":["https://openalex.org/I52669646"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Grant Chou","raw_affiliation_strings":["Western Washington University,Department of Computer Science,Bellingham,WA,USA","Department of Computer Science, Western Washington University, Bellingham, WA, USA"],"affiliations":[{"raw_affiliation_string":"Western Washington University,Department of Computer Science,Bellingham,WA,USA","institution_ids":["https://openalex.org/I52669646"]},{"raw_affiliation_string":"Department of Computer Science, Western Washington University, Bellingham, WA, USA","institution_ids":["https://openalex.org/I52669646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043859102","display_name":"Lilu Martin","orcid":null},"institutions":[{"id":"https://openalex.org/I52669646","display_name":"Western Washington University","ror":"https://ror.org/05wn7r715","country_code":"US","type":"education","lineage":["https://openalex.org/I52669646"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lilu Martin","raw_affiliation_strings":["Western Washington University,Department of Computer Science,Bellingham,WA,USA","Department of Computer Science, Western Washington University, Bellingham, WA, USA"],"affiliations":[{"raw_affiliation_string":"Western Washington University,Department of Computer Science,Bellingham,WA,USA","institution_ids":["https://openalex.org/I52669646"]},{"raw_affiliation_string":"Department of Computer Science, Western Washington University, Bellingham, WA, USA","institution_ids":["https://openalex.org/I52669646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082167919","display_name":"Theo Miller","orcid":null},"institutions":[{"id":"https://openalex.org/I52669646","display_name":"Western Washington University","ror":"https://ror.org/05wn7r715","country_code":"US","type":"education","lineage":["https://openalex.org/I52669646"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Theo Miller","raw_affiliation_strings":["Western Washington University,Department of Computer Science,Bellingham,WA,USA","Department of Computer Science, Western Washington University, Bellingham, WA, USA"],"affiliations":[{"raw_affiliation_string":"Western Washington University,Department of Computer Science,Bellingham,WA,USA","institution_ids":["https://openalex.org/I52669646"]},{"raw_affiliation_string":"Department of Computer Science, Western Washington University, Bellingham, WA, USA","institution_ids":["https://openalex.org/I52669646"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044101172","display_name":"Dylan Thompson","orcid":null},"institutions":[{"id":"https://openalex.org/I52669646","display_name":"Western Washington University","ror":"https://ror.org/05wn7r715","country_code":"US","type":"education","lineage":["https://openalex.org/I52669646"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dylan Thompson","raw_affiliation_strings":["Western Washington University,Department of Computer Science,Bellingham,WA,USA","Department of Computer Science, Western Washington University, Bellingham, WA, USA"],"affiliations":[{"raw_affiliation_string":"Western Washington University,Department of Computer Science,Bellingham,WA,USA","institution_ids":["https://openalex.org/I52669646"]},{"raw_affiliation_string":"Department of Computer Science, Western Washington University, Bellingham, WA, USA","institution_ids":["https://openalex.org/I52669646"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046109728","display_name":"Filip Jagodzinski","orcid":"https://orcid.org/0000-0001-7783-2241"},"institutions":[{"id":"https://openalex.org/I52669646","display_name":"Western Washington University","ror":"https://ror.org/05wn7r715","country_code":"US","type":"education","lineage":["https://openalex.org/I52669646"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Filip Jagodzinski","raw_affiliation_strings":["Western Washington University,Department of Computer Science,Bellingham,WA,USA","Department of Computer Science, Western Washington University, Bellingham, WA, USA"],"affiliations":[{"raw_affiliation_string":"Western Washington University,Department of Computer Science,Bellingham,WA,USA","institution_ids":["https://openalex.org/I52669646"]},{"raw_affiliation_string":"Department of Computer Science, Western Washington University, Bellingham, WA, USA","institution_ids":["https://openalex.org/I52669646"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5040587306"],"corresponding_institution_ids":["https://openalex.org/I52669646"],"apc_list":null,"apc_paid":null,"fwci":1.3237,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.82199367,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"487","issue":null,"first_page":"3498","last_page":"3503"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/indel","display_name":"Indel","score":0.9668277502059937},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.813129186630249},{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.5723593831062317},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5594837069511414},{"id":"https://openalex.org/keywords/indel-mutation","display_name":"INDEL Mutation","score":0.5489332675933838},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5380617380142212},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.4547114372253418},{"id":"https://openalex.org/keywords/mutation-testing","display_name":"Mutation testing","score":0.4159211218357086},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4128771126270294},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.319550484418869},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.17345958948135376}],"concepts":[{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.9668277502059937},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.813129186630249},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.5723593831062317},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5594837069511414},{"id":"https://openalex.org/C2910714999","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"INDEL Mutation","level":5,"score":0.5489332675933838},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5380617380142212},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.4547114372253418},{"id":"https://openalex.org/C163565370","wikidata":"https://www.wikidata.org/wiki/Q4308623","display_name":"Mutation testing","level":4,"score":0.4159211218357086},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4128771126270294},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.319550484418869},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.17345958948135376},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm55620.2022.9995279","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9995279","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1967924760","https://openalex.org/W1971376828","https://openalex.org/W1992344680","https://openalex.org/W2030919957","https://openalex.org/W2052541209","https://openalex.org/W2057462176","https://openalex.org/W2086293424","https://openalex.org/W2089335658","https://openalex.org/W2103533532","https://openalex.org/W2135932455","https://openalex.org/W2160823906","https://openalex.org/W2163293619","https://openalex.org/W2164044671","https://openalex.org/W2201713963","https://openalex.org/W2749499006","https://openalex.org/W2809360952","https://openalex.org/W2940885779","https://openalex.org/W3097680689","https://openalex.org/W4200336584","https://openalex.org/W4205608036"],"related_works":["https://openalex.org/W1971376828","https://openalex.org/W2135846417","https://openalex.org/W2167094946","https://openalex.org/W4206406917","https://openalex.org/W2080028493","https://openalex.org/W2046457574","https://openalex.org/W3103976079","https://openalex.org/W4387460329","https://openalex.org/W2996849075","https://openalex.org/W2940885779"],"abstract_inverted_index":{"The":[0],"effects":[1,74],"of":[2,30,51,75,86],"insertion":[3],"and":[4,80,91],"deletion":[5],"mutations":[6],"(InDels)":[7],"on":[8],"protein":[9],"structures":[10],"are":[11],"understudied":[12],"because":[13],"performing":[14],"such":[15],"experiments":[16],"in":[17,44,59],"vitro":[18],"is":[19],"prohibitive.":[20],"Consequently,":[21],"little":[22],"real":[23],"world":[24],"data":[25,93],"exists":[26],"for":[27,68],"these":[28],"types":[29],"mutations,":[31],"despite":[32],"many":[33],"diseases":[34],"being":[35],"caused":[36],"by":[37],"InDels.":[38,52],"Computational":[39],"modeling":[40],"can":[41],"support":[42],"researchers":[43],"their":[45],"efforts":[46],"to":[47,62,98],"understand":[48],"the":[49,73,76,95,99],"impacts":[50],"In":[53],"this":[54],"work":[55],"we":[56],"present":[57],"an":[58],"silico":[60],"approach":[61],"generate":[63],"all":[64],"exhaustive":[65],"InDel":[66],"mutants":[67,96],"a":[69,84],"protein.":[70],"We":[71],"analyze":[72],"InDels":[77],"via":[78],"heatmaps":[79],"other":[81],"visualizations":[82],"using":[83],"variety":[85],"metrics,":[87],"including":[88],"rigidity":[89],"analysis":[90],"structural":[92],"about":[94],"relative":[97],"wild":[100],"type.":[101]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2025-12-23T23:11:35.936235","created_date":"2025-10-10T00:00:00"}
