{"id":"https://openalex.org/W4313525404","doi":"https://doi.org/10.1109/bibm55620.2022.9995200","title":"DEAL: Construction of a Disease-aware Human Cell Knowledge Graph from Biomedicine Literature","display_name":"DEAL: Construction of a Disease-aware Human Cell Knowledge Graph from Biomedicine Literature","publication_year":2022,"publication_date":"2022-12-06","ids":{"openalex":"https://openalex.org/W4313525404","doi":"https://doi.org/10.1109/bibm55620.2022.9995200"},"language":"en","primary_location":{"id":"doi:10.1109/bibm55620.2022.9995200","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9995200","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035496267","display_name":"Min Fu","orcid":"https://orcid.org/0000-0002-1557-0810"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Fu","raw_affiliation_strings":["Sichuan University,School of Computer Science,Chengdu,China","School of Computer Science, Sichuan University, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sichuan University,School of Computer Science,Chengdu,China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"School of Computer Science, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210125143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103153652","display_name":"Lei Duan","orcid":"https://orcid.org/0000-0001-7254-1832"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Duan","raw_affiliation_strings":["Sichuan University,School of Computer Science,Chengdu,China","Med-X Center for Informatics, Sichuan University, Chengdu, China","School of Computer Science, Sichuan University, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sichuan University,School of Computer Science,Chengdu,China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"Med-X Center for Informatics, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"School of Computer Science, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210125143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103002288","display_name":"Weipeng Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weipeng Jiang","raw_affiliation_strings":["Sichuan University,School of Computer Science,Chengdu,China","School of Computer Science, Sichuan University, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sichuan University,School of Computer Science,Chengdu,China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"School of Computer Science, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210125143"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042699641","display_name":"Yuening Qu","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuening Qu","raw_affiliation_strings":["Sichuan University,School of Computer Science,Chengdu,China","School of Computer Science, Sichuan University, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sichuan University,School of Computer Science,Chengdu,China","institution_ids":["https://openalex.org/I24185976"]},{"raw_affiliation_string":"School of Computer Science, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210125143"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"36","issue":null,"first_page":"3804","last_page":"3806"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomedicine","display_name":"Biomedicine","score":0.936009407043457},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7172059416770935},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.6584275960922241},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.5953416228294373},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5836471915245056},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5702658891677856},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4920491874217987},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.4903435707092285},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4722007215023041},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.46013158559799194},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36437371373176575},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.3202219009399414},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29216182231903076},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.27921101450920105},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.18649420142173767}],"concepts":[{"id":"https://openalex.org/C66782513","wikidata":"https://www.wikidata.org/wiki/Q864601","display_name":"Biomedicine","level":2,"score":0.936009407043457},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7172059416770935},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.6584275960922241},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.5953416228294373},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5836471915245056},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5702658891677856},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4920491874217987},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.4903435707092285},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4722007215023041},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.46013158559799194},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36437371373176575},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3202219009399414},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29216182231903076},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.27921101450920105},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.18649420142173767},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm55620.2022.9995200","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9995200","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5699999928474426,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1964670939","https://openalex.org/W2107598941","https://openalex.org/W2896457183","https://openalex.org/W2911489562","https://openalex.org/W2991414673","https://openalex.org/W3157957864","https://openalex.org/W4297977428","https://openalex.org/W6755207826"],"related_works":["https://openalex.org/W842810586","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W4236762297","https://openalex.org/W2444550338","https://openalex.org/W2369351710","https://openalex.org/W2594363579","https://openalex.org/W2169232658"],"abstract_inverted_index":{"Exploring":[0],"disease-associated":[1],"human":[2,19,85,107],"cells":[3,20,39,164],"can":[4,68,78,154],"help":[5],"researchers":[6],"identify":[7],"pathogenesis":[8],"and":[9,18,38,62,67,145,163,165],"develop":[10],"treatments.":[11],"However,":[12],"mining":[13],"the":[14,52,117,126,132,141,146,157],"relationships":[15,64],"between":[16],"diseases":[17,37,162],"is":[21,48],"difficult":[22],"due":[23,50],"to":[24,51,103,161],"several":[25],"challenges,":[26],"including":[27,125],"information":[28,46],"extraction":[29,139,142],"from":[30,89,111],"unstructured":[31,55],"knowledge":[32,58,87,109,118,147],"sources.":[33],"Biomedicine":[34],"literature":[35],"on":[36],"contains":[40],"a":[41,72,83,98,105,121,135],"wealth":[42],"of":[43,54,123,128,134,143],"potentially":[44],"useful":[45],"but":[47],"underutilized":[49],"complexity":[53],"information.":[56],"A":[57],"graph":[59,88,110,119,148],"provides":[60],"organized":[61],"structured":[63],"among":[65],"entities":[66,159],"be":[69,79],"served":[70],"as":[71],"solution.":[73],"Nevertheless,":[74],"few":[75],"existing":[76],"tools":[77],"found":[80],"for":[81],"constructing":[82],"disease-aware":[84,106],"cell":[86,108],"biomedicine":[90,112],"literature.":[91,113],"To":[92],"fill":[93],"this":[94],"gap,":[95],"we":[96],"propose":[97],"novel":[99],"approach,":[100],"called":[101],"DEAL,":[102],"construct":[104],"Technically,":[114],"DEAL":[115,153],"builds":[116],"through":[120],"series":[122],"steps":[124],"processing":[127],"distant":[129,136],"supervision":[130,137],"data,":[131],"training":[133],"relation":[138],"model,":[140],"triples,":[144],"construction.":[149],"Experiments":[150],"demonstrate":[151],"that":[152],"effectively":[155],"express":[156],"extracted":[158],"related":[160],"their":[166],"relationships.":[167]},"counts_by_year":[],"updated_date":"2026-07-26T07:53:14.480251","created_date":"2025-10-10T00:00:00"}
