{"id":"https://openalex.org/W4313525385","doi":"https://doi.org/10.1109/bibm55620.2022.9995180","title":"Protein Subcellular Localization Prediction by Combining ProtBert and BiGRU","display_name":"Protein Subcellular Localization Prediction by Combining ProtBert and BiGRU","publication_year":2022,"publication_date":"2022-12-06","ids":{"openalex":"https://openalex.org/W4313525385","doi":"https://doi.org/10.1109/bibm55620.2022.9995180"},"language":"en","primary_location":{"id":"doi:10.1109/bibm55620.2022.9995180","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9995180","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100379691","display_name":"Zeyu Wang","orcid":"https://orcid.org/0000-0002-1223-1661"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210134929","display_name":"Jilin Province Science and Technology Department","ror":"https://ror.org/049x38272","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210134929"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zeyu Wang","raw_affiliation_strings":["Jilin University,College of Computer Science and Technology of,Changchun,China,130012"],"affiliations":[{"raw_affiliation_string":"Jilin University,College of Computer Science and Technology of,Changchun,China,130012","institution_ids":["https://openalex.org/I4210134929","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101944426","display_name":"Tao Lin","orcid":"https://orcid.org/0000-0003-1170-636X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Lin","raw_affiliation_strings":["State Key Laboratory of Computer Science Institue of Software Chinese Academy of Sciences,Beijing,China,230026"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Computer Science Institue of Software Chinese Academy of Sciences,Beijing,China,230026","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I19820366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041307905","display_name":"Xiaoli Yang","orcid":"https://orcid.org/0000-0002-4833-3192"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210134929","display_name":"Jilin Province Science and Technology Department","ror":"https://ror.org/049x38272","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210134929"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoli Yang","raw_affiliation_strings":["Jilin University,College of Computer Science and Technology of,Changchun,China,130012"],"affiliations":[{"raw_affiliation_string":"Jilin University,College of Computer Science and Technology of,Changchun,China,130012","institution_ids":["https://openalex.org/I4210134929","https://openalex.org/I194450716"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076665413","display_name":"Yanchun Liang","orcid":"https://orcid.org/0000-0002-1147-3968"},"institutions":[{"id":"https://openalex.org/I4210165204","display_name":"Zhuhai Institute of Advanced Technology","ror":"https://ror.org/05r1mzq61","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761","https://openalex.org/I4210165204"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]},{"id":"https://openalex.org/I4210134929","display_name":"Jilin Province Science and Technology Department","ror":"https://ror.org/049x38272","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210134929"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanchun Liang","raw_affiliation_strings":["Jilin University,College of Computer Science and Technology of,Changchun,China,130012","School of Computer Science, Zhuhai college of Science and Technology, Zhuhai, China"],"affiliations":[{"raw_affiliation_string":"Jilin University,College of Computer Science and Technology of,Changchun,China,130012","institution_ids":["https://openalex.org/I4210134929","https://openalex.org/I194450716"]},{"raw_affiliation_string":"School of Computer Science, Zhuhai college of Science and Technology, Zhuhai, China","institution_ids":["https://openalex.org/I4210165204"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058522008","display_name":"Xiaohu Shi","orcid":"https://orcid.org/0000-0002-5115-8137"},"institutions":[{"id":"https://openalex.org/I4210165204","display_name":"Zhuhai Institute of Advanced Technology","ror":"https://ror.org/05r1mzq61","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761","https://openalex.org/I4210165204"]},{"id":"https://openalex.org/I4210134929","display_name":"Jilin Province Science and Technology Department","ror":"https://ror.org/049x38272","country_code":"CN","type":"government","lineage":["https://openalex.org/I4210134929"]},{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaohu Shi","raw_affiliation_strings":["Jilin University,College of Computer Science and Technology of,Changchun,China,130012","School of Computer Science, Zhuhai college of Science and Technology, Zhuhai, China"],"affiliations":[{"raw_affiliation_string":"Jilin University,College of Computer Science and Technology of,Changchun,China,130012","institution_ids":["https://openalex.org/I4210134929","https://openalex.org/I194450716"]},{"raw_affiliation_string":"School of Computer Science, Zhuhai college of Science and Technology, Zhuhai, China","institution_ids":["https://openalex.org/I4210165204"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5100379691"],"corresponding_institution_ids":["https://openalex.org/I194450716","https://openalex.org/I4210134929"],"apc_list":null,"apc_paid":null,"fwci":1.7643,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.8710443,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subcellular-localization","display_name":"Subcellular localization","score":0.8366682529449463},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.7477999925613403},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6641196608543396},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6490691900253296},{"id":"https://openalex.org/keywords/protein-subcellular-localization-prediction","display_name":"Protein subcellular localization prediction","score":0.6472490429878235},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6273608207702637},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5063377618789673},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.4998815059661865},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4345698058605194},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.4169631004333496},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.1397818922996521},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11528712511062622},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06824532151222229},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.0586945116519928}],"concepts":[{"id":"https://openalex.org/C2776879804","wikidata":"https://www.wikidata.org/wiki/Q7630919","display_name":"Subcellular localization","level":3,"score":0.8366682529449463},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.7477999925613403},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6641196608543396},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6490691900253296},{"id":"https://openalex.org/C140051345","wikidata":"https://www.wikidata.org/wiki/Q7251501","display_name":"Protein subcellular localization prediction","level":3,"score":0.6472490429878235},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6273608207702637},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5063377618789673},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.4998815059661865},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4345698058605194},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.4169631004333496},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.1397818922996521},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11528712511062622},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06824532151222229},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0586945116519928},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm55620.2022.9995180","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9995180","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320316081","display_name":"Jilin Province Development and Reform Commission","ror":null},{"id":"https://openalex.org/F4320337495","display_name":"Technology Development","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1999236976","https://openalex.org/W2102461176","https://openalex.org/W2152482858","https://openalex.org/W2157331557","https://openalex.org/W2730472814","https://openalex.org/W2896457183","https://openalex.org/W2949342052","https://openalex.org/W2949779257","https://openalex.org/W2977368063","https://openalex.org/W3129049721","https://openalex.org/W4207034301","https://openalex.org/W4287724045","https://openalex.org/W6755207826","https://openalex.org/W6780145172"],"related_works":["https://openalex.org/W2351398203","https://openalex.org/W4205775722","https://openalex.org/W4366498163","https://openalex.org/W2402975874","https://openalex.org/W2384110740","https://openalex.org/W2389499846","https://openalex.org/W2374123826","https://openalex.org/W2128345772","https://openalex.org/W256932276","https://openalex.org/W2144244209"],"abstract_inverted_index":{"The":[0,102],"subcellular":[1,26,58],"localization":[2,27],"of":[3,46,81],"proteins":[4],"is":[5,40,71,87],"very":[6],"important":[7],"for":[8],"further":[9],"understanding":[10],"their":[11],"functions.":[12],"This":[13],"paper":[14],"proposes":[15],"a":[16,52],"deep":[17],"learning":[18],"method":[19],"called":[20],"PBLoc":[21,34,84,106],"to":[22,42,56,62,89],"predict":[23,57],"the":[24,33,36,44,47,75,79,113],"protein":[25,38,48],"from":[28],"sequence":[29,64],"information":[30],"only.":[31],"In":[32,60],"method,":[35,85],"pre-trained":[37],"model\u2013ProtBert,":[39],"utilized":[41],"extract":[43],"features":[45,65],"sequence,":[49],"followed":[50],"by":[51],"bidirectional":[53],"GRU":[54],"model":[55],"localization.":[59],"order":[61],"capture":[63],"more":[66],"accurately,":[67],"an":[68],"attention":[69],"mechanism":[70],"also":[72,100],"used":[73],"in":[74],"model.":[76],"To":[77],"verify":[78],"performance":[80],"our":[82],"proposed":[83],"it":[86],"applied":[88],"DeepLoc":[90],"benchmark":[91],"dataset.":[92],"For":[93],"comparison,":[94],"other":[95,114],"8":[96],"SOTA":[97],"algorithms":[98],"are":[99],"executed.":[101],"results":[103],"show":[104],"that":[105],"without":[107],"using":[108],"any":[109],"evolution":[110],"feature":[111],"outperforms":[112],"compared":[115],"algorithms.":[116]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3}],"updated_date":"2025-12-23T23:11:35.936235","created_date":"2025-10-10T00:00:00"}
