{"id":"https://openalex.org/W4313527315","doi":"https://doi.org/10.1109/bibm55620.2022.9995094","title":"Contrastive Self-Supervised Representation Learning for Protein Complexes Identification","display_name":"Contrastive Self-Supervised Representation Learning for Protein Complexes Identification","publication_year":2022,"publication_date":"2022-12-06","ids":{"openalex":"https://openalex.org/W4313527315","doi":"https://doi.org/10.1109/bibm55620.2022.9995094"},"language":"en","primary_location":{"id":"doi:10.1109/bibm55620.2022.9995094","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9995094","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087193641","display_name":"Peixuan Zhou","orcid":"https://orcid.org/0009-0005-5377-0767"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Peixuan Zhou","raw_affiliation_strings":["Dalian Maritime University,School of Information Science and Technology,Dalian,China","School of Information Science and Technology, Dalian Maritime University, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Dalian Maritime University,School of Information Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"School of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046020427","display_name":"Yijia Zhang","orcid":"https://orcid.org/0000-0002-5843-4675"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yijia Zhang","raw_affiliation_strings":["Dalian Maritime University,School of Information Science and Technology,Dalian,China","School of Information Science and Technology, Dalian Maritime University, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Dalian Maritime University,School of Information Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"School of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100405395","display_name":"Fei Chen","orcid":"https://orcid.org/0000-0002-4346-6906"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei Chen","raw_affiliation_strings":["Dalian Maritime University,School of Information Science and Technology,Dalian,China","School of Information Science and Technology, Dalian Maritime University, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Dalian Maritime University,School of Information Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"School of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052104124","display_name":"Mingyu Lu","orcid":"https://orcid.org/0000-0002-8663-9870"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingyu Lu","raw_affiliation_strings":["Dalian Maritime University,School of Information Science and Technology,Dalian,China","School of Information Science and Technology, Dalian Maritime University, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Dalian Maritime University,School of Information Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"School of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111253994","display_name":"Wen Qu","orcid":null},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wen Qu","raw_affiliation_strings":["Dalian Maritime University,School of Information Science and Technology,Dalian,China","School of Information Science and Technology, Dalian Maritime University, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Dalian Maritime University,School of Information Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I43313876"]},{"raw_affiliation_string":"School of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023931221","display_name":"Hongfei Lin","orcid":"https://orcid.org/0000-0003-0872-7688"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfei Lin","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China","School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100705977","display_name":"Xiaoxia Liu","orcid":"https://orcid.org/0009-0003-6662-9020"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaoxia Liu","raw_affiliation_strings":["Stanford University,Department of Neurology and Neurological Sciences,Stanford,CA,USA,94305"],"affiliations":[{"raw_affiliation_string":"Stanford University,Department of Neurology and Neurological Sciences,Stanford,CA,USA,94305","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5087193641"],"corresponding_institution_ids":["https://openalex.org/I43313876"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.45806962,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"2","issue":null,"first_page":"712","last_page":"717"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6833909749984741},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6000361442565918},{"id":"https://openalex.org/keywords/news-aggregator","display_name":"News aggregator","score":0.588071346282959},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5671152472496033},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5217921733856201},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.47806957364082336},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4682738780975342},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4567789137363434},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.4561135768890381},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3805028796195984},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.33684277534484863},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.31124961376190186}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6833909749984741},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6000361442565918},{"id":"https://openalex.org/C180505990","wikidata":"https://www.wikidata.org/wiki/Q498267","display_name":"News aggregator","level":2,"score":0.588071346282959},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5671152472496033},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5217921733856201},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.47806957364082336},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4682738780975342},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4567789137363434},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.4561135768890381},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3805028796195984},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33684277534484863},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.31124961376190186},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm55620.2022.9995094","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9995094","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1986214964","https://openalex.org/W1987363726","https://openalex.org/W1991008210","https://openalex.org/W1994505288","https://openalex.org/W2005308400","https://openalex.org/W2050721857","https://openalex.org/W2082565035","https://openalex.org/W2116117181","https://openalex.org/W2132582966","https://openalex.org/W2136850043","https://openalex.org/W2140280811","https://openalex.org/W2160429376","https://openalex.org/W2163485494","https://openalex.org/W2167869241","https://openalex.org/W2509514644","https://openalex.org/W2905614462","https://openalex.org/W2908670560","https://openalex.org/W2944252872","https://openalex.org/W3003832741","https://openalex.org/W3008598684","https://openalex.org/W3020748261"],"related_works":["https://openalex.org/W3036238356","https://openalex.org/W2603387358","https://openalex.org/W2767445978","https://openalex.org/W2570892890","https://openalex.org/W3092831610","https://openalex.org/W4206057490","https://openalex.org/W962287279","https://openalex.org/W3112734853","https://openalex.org/W2012785328","https://openalex.org/W4285218279"],"abstract_inverted_index":{"The":[0],"identification":[1],"of":[2,14,35,46,65],"protein":[3,28,39,87,121,131,151],"complexes":[4,29,40,152],"can":[5],"help":[6],"understand":[7],"cellular":[8],"organization":[9],"principles":[10],"and":[11,62,109,132,170,187,197],"the":[12,43,47,51,56,63,106,126,140,178],"mechanism":[13],"biological":[15],"evolution.":[16],"In":[17,159],"recent":[18],"years,":[19],"researchers":[20],"have":[21],"proposed":[22],"numerous":[23],"computational":[24],"methods":[25,37,69,180],"to":[26,85,101,115,149,161],"identify":[27,38,86,150],"through":[30],"their":[31],"interaction":[32,104],"networks.":[33],"Most":[34],"these":[36],"based":[41,95,138,153],"on":[42,96,139,154],"topological":[44,52],"structure":[45,53],"PPI":[48,57,107,136,157,166],"network.":[49,158],"However,":[50],"contained":[54],"in":[55,74,105],"network":[58,99,108,137],"is":[59],"very":[60],"complicated,":[61],"applicability":[64],"advanced":[66],"representation":[67,82,128,142],"learning":[68,83],"has":[70],"not":[71],"been":[72],"researched":[73],"depth.":[75],"This":[76],"paper":[77],"proposes":[78],"a":[79,92,111,134,155],"contrastive":[80,112],"self-supervised":[81,113],"method":[84,90,114,194],"complexes.":[88],"Our":[89],"uses":[91],"mix-hop":[93],"aggregator":[94],"graph":[97],"neural":[98],"(GNN)":[100],"capture":[102],"high-order":[103],"leverage":[110],"train":[116],"our":[117,163,193],"model":[118],"without":[119],"introducing":[120],"labels.":[122],"Then,":[123],"we":[124,145],"get":[125],"vector":[127,141],"for":[129],"each":[130],"construct":[133],"weighted":[135,156],"similarity.":[143],"Finally,":[144],"apply":[146],"clustering":[147],"aggregation":[148],"order":[160],"access":[162],"method,":[164],"different":[165],"networks,":[167],"DIP,":[168],"Kroganl4k":[169],"Biogrid,":[171],"are":[172],"used":[173],"as":[174],"datasets.":[175],"By":[176],"comparing":[177],"competing":[179],"including":[181],"COACH,":[182],"CMC,":[183],"MCODE,":[184],"ClusterONE,":[185],"GANE":[186],"COAN,":[188],"experimental":[189],"results":[190],"show":[191],"that":[192],"outperforms":[195],"classic":[196],"state-of-the-art":[198],"methods.":[199]},"counts_by_year":[],"updated_date":"2025-12-23T23:11:35.936235","created_date":"2025-10-10T00:00:00"}
