{"id":"https://openalex.org/W4313527213","doi":"https://doi.org/10.1109/bibm55620.2022.9995077","title":"Joint Extraction of Biomedical Entities and Relations based on Decomposition and Recombination Strategy","display_name":"Joint Extraction of Biomedical Entities and Relations based on Decomposition and Recombination Strategy","publication_year":2022,"publication_date":"2022-12-06","ids":{"openalex":"https://openalex.org/W4313527213","doi":"https://doi.org/10.1109/bibm55620.2022.9995077"},"language":"en","primary_location":{"id":"doi:10.1109/bibm55620.2022.9995077","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9995077","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":null,"any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023593453","display_name":"Qiang Zhu","orcid":"https://orcid.org/0000-0002-4677-1244"},"institutions":[{"id":"https://openalex.org/I4210119942","display_name":"Wuhan Textile University","ror":"https://ror.org/02jgsf398","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210119942"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qiang Zhu","raw_affiliation_strings":["Engineering Research Center of Hubei Province for Clothing Information","Hubei Provincial Engineering Research Center for Intelligent Textile and Fashion","School of Computer Science and Artificial Intelligence, Wuhan Textile University"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Hubei Province for Clothing Information","institution_ids":[]},{"raw_affiliation_string":"Hubei Provincial Engineering Research Center for Intelligent Textile and Fashion","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence, Wuhan Textile University","institution_ids":["https://openalex.org/I4210119942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042965582","display_name":"Hong Cheng","orcid":"https://orcid.org/0000-0001-5532-9530"},"institutions":[{"id":"https://openalex.org/I4210119942","display_name":"Wuhan Textile University","ror":"https://ror.org/02jgsf398","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210119942"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cheng Hong","raw_affiliation_strings":["Engineering Research Center of Hubei Province for Clothing Information","Hubei Provincial Engineering Research Center for Intelligent Textile and Fashion","School of Computer Science and Artificial Intelligence, Wuhan Textile University"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Hubei Province for Clothing Information","institution_ids":[]},{"raw_affiliation_string":"Hubei Provincial Engineering Research Center for Intelligent Textile and Fashion","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence, Wuhan Textile University","institution_ids":["https://openalex.org/I4210119942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024168142","display_name":"Bangchao Wang","orcid":"https://orcid.org/0000-0001-6920-1810"},"institutions":[{"id":"https://openalex.org/I4210119942","display_name":"Wuhan Textile University","ror":"https://ror.org/02jgsf398","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210119942"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bangchao Wang","raw_affiliation_strings":["Engineering Research Center of Hubei Province for Clothing Information","Hubei Provincial Engineering Research Center for Intelligent Textile and Fashion","School of Computer Science and Artificial Intelligence, Wuhan Textile University"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Hubei Province for Clothing Information","institution_ids":[]},{"raw_affiliation_string":"Hubei Provincial Engineering Research Center for Intelligent Textile and Fashion","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence, Wuhan Textile University","institution_ids":["https://openalex.org/I4210119942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074593997","display_name":"Xinrong Hu","orcid":"https://orcid.org/0000-0001-6563-669X"},"institutions":[{"id":"https://openalex.org/I4210119942","display_name":"Wuhan Textile University","ror":"https://ror.org/02jgsf398","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210119942"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinrong Hu","raw_affiliation_strings":["Engineering Research Center of Hubei Province for Clothing Information","School of Computer Science and Artificial Intelligence, Wuhan Textile University","Hubei Provincial Engineering Research Center for Intelligent Textile and Fashion"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Hubei Province for Clothing Information","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence, Wuhan Textile University","institution_ids":["https://openalex.org/I4210119942"]},{"raw_affiliation_string":"Hubei Provincial Engineering Research Center for Intelligent Textile and Fashion","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101445040","display_name":"Jie Yang","orcid":"https://orcid.org/0000-0003-1317-8142"},"institutions":[{"id":"https://openalex.org/I204824540","display_name":"University of Wollongong","ror":"https://ror.org/00jtmb277","country_code":"AU","type":"education","lineage":["https://openalex.org/I204824540"]},{"id":"https://openalex.org/I1323252656","display_name":"Information Technology University","ror":"https://ror.org/00ngv8j44","country_code":"PK","type":"education","lineage":["https://openalex.org/I1323252656"]}],"countries":["AU","PK"],"is_corresponding":false,"raw_author_name":"Jie Yang","raw_affiliation_strings":["University of Wollongong,School of Computing and Information Technology","School of Computing and Information Technology, University of Wollongong"],"affiliations":[{"raw_affiliation_string":"University of Wollongong,School of Computing and Information Technology","institution_ids":["https://openalex.org/I204824540"]},{"raw_affiliation_string":"School of Computing and Information Technology, University of Wollongong","institution_ids":["https://openalex.org/I1323252656","https://openalex.org/I204824540"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100734999","display_name":"Junping Liu","orcid":"https://orcid.org/0000-0002-8198-5846"},"institutions":[{"id":"https://openalex.org/I4210119942","display_name":"Wuhan Textile University","ror":"https://ror.org/02jgsf398","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210119942"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junping Liu","raw_affiliation_strings":["Engineering Research Center of Hubei Province for Clothing Information","School of Computer Science and Artificial Intelligence, Wuhan Textile University","Hubei Provincial Engineering Research Center for Intelligent Textile and Fashion"],"affiliations":[{"raw_affiliation_string":"Engineering Research Center of Hubei Province for Clothing Information","institution_ids":[]},{"raw_affiliation_string":"School of Computer Science and Artificial Intelligence, Wuhan Textile University","institution_ids":["https://openalex.org/I4210119942"]},{"raw_affiliation_string":"Hubei Provincial Engineering Research Center for Intelligent Textile and Fashion","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5023593453"],"corresponding_institution_ids":["https://openalex.org/I4210119942"],"apc_list":null,"apc_paid":null,"fwci":0.1044,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.34875709,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"2016","issue":null,"first_page":"1851","last_page":"1856"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7375137209892273},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.6866438388824463},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.6607369780540466},{"id":"https://openalex.org/keywords/decomposition","display_name":"Decomposition","score":0.6309927701950073},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5699480175971985},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.5319633483886719},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5060550570487976},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45999041199684143},{"id":"https://openalex.org/keywords/joint","display_name":"Joint (building)","score":0.4422358572483063},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4390510618686676},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.41135215759277344},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.344315767288208},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33154022693634033},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3136139512062073},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13896805047988892},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09717124700546265},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07873263955116272}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7375137209892273},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.6866438388824463},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.6607369780540466},{"id":"https://openalex.org/C124681953","wikidata":"https://www.wikidata.org/wiki/Q339062","display_name":"Decomposition","level":2,"score":0.6309927701950073},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5699480175971985},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.5319633483886719},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5060550570487976},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45999041199684143},{"id":"https://openalex.org/C18555067","wikidata":"https://www.wikidata.org/wiki/Q8375051","display_name":"Joint (building)","level":2,"score":0.4422358572483063},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4390510618686676},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.41135215759277344},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.344315767288208},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33154022693634033},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3136139512062073},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13896805047988892},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09717124700546265},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07873263955116272},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C170154142","wikidata":"https://www.wikidata.org/wiki/Q150737","display_name":"Architectural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibm55620.2022.9995077","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9995077","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:ro.uow.edu.au:test2021-12764","is_oa":false,"landing_page_url":"https://ro.uow.edu.au/test2021/7217","pdf_url":null,"source":{"id":"https://openalex.org/S4306400510","display_name":"Research Online (University of Wollongong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I204824540","host_organization_name":"University of Wollongong","host_organization_lineage":["https://openalex.org/I204824540"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus Harvesting Series","raw_type":"text"},{"id":"pmh:oai:figshare.com:article/27808095","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/27808095","is_oa":true,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1610821757","https://openalex.org/W2129767020","https://openalex.org/W2169491861","https://openalex.org/W2170189740","https://openalex.org/W2579356637","https://openalex.org/W2734608416","https://openalex.org/W2765742249","https://openalex.org/W2808142148","https://openalex.org/W2911489562","https://openalex.org/W2935052563","https://openalex.org/W2964026782","https://openalex.org/W2983315135","https://openalex.org/W2984582583","https://openalex.org/W3004541293","https://openalex.org/W3090145439","https://openalex.org/W3090302425","https://openalex.org/W3116427155","https://openalex.org/W3165523615","https://openalex.org/W3196182470","https://openalex.org/W3213855194","https://openalex.org/W4288104771","https://openalex.org/W4293471672","https://openalex.org/W4297818491","https://openalex.org/W6732946871","https://openalex.org/W6752392434","https://openalex.org/W6767498107","https://openalex.org/W6768058859","https://openalex.org/W6773747823"],"related_works":["https://openalex.org/W4387688064","https://openalex.org/W2976808399","https://openalex.org/W4307077703","https://openalex.org/W4221155469","https://openalex.org/W3198173888","https://openalex.org/W2762829504","https://openalex.org/W3045744254","https://openalex.org/W4200558543","https://openalex.org/W4379933534","https://openalex.org/W4282813629"],"abstract_inverted_index":{"Entities":[0],"and":[1,36,48,58,64,75,91,106,114,162,167],"relations":[2,37,49,59,76,115],"extraction":[3,55,77],"is":[4,16],"one":[5],"of":[6,17,23,45,56],"the":[7,21,43,127,134,141,156],"key":[8],"task":[9,78],"to":[10,20,41,67,124,139],"build":[11],"medical":[12,24],"knowledge":[13],"graph,":[14],"which":[15,83],"great":[18,31],"significance":[19],"development":[22],"artificial":[25],"intelligence.":[26],"However,":[27],"overlapping":[28,128],"triples":[29,129],"are":[30,84,98],"challenge":[32],"for":[33,111],"biomedical":[34,46,69,169],"entities":[35,47,57,74,113],"extraction.":[38,116],"In":[39],"order":[40],"improve":[42,155],"performance":[44],"extraction,":[50],"we":[51,102,118,132],"propose":[52,119,133],"a":[53,104,120],"joint":[54,112],"method":[60,72,123,138,153],"based":[61],"on":[62],"decomposition":[63,105],"recombination":[65,92,107],"strategy":[66],"mine":[68],"text.":[70],"Our":[71,95],"decomposes":[73],"into":[79],"three":[80],"related":[81],"sub-modules,":[82],"entity":[85],"tagging":[86],"module,":[87],"relation":[88],"classification":[89],"module":[90],"matching":[93],"module.":[94],"main":[96],"contributions":[97],"as":[99],"follows:":[100],"first,":[101],"introduce":[103],"end-to-end":[108],"learning":[109],"framework":[110],"Second,":[117],"bi-directional":[121],"prediction":[122],"deal":[125],"with":[126],"problem.":[130],"Finally,":[131],"negative":[135],"samples":[136],"generation":[137],"alleviate":[140],"error":[142],"accumulation":[143],"among":[144],"these":[145],"modules.":[146],"The":[147],"extensive":[148],"experiments":[149],"demonstrate":[150],"that":[151],"our":[152],"can":[154],"F1":[157],"score":[158],"by":[159],"4.36%,":[160],"2.13%":[161],"11.72%":[163],"in":[164],"ADE,":[165],"DDI":[166],"BB":[168],"corpus.":[170]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
