{"id":"https://openalex.org/W4313413074","doi":"https://doi.org/10.1109/bibm55620.2022.9994895","title":"An Approach to Relax the Infinite Sites Assumption in Tumor Phylogeny Distance Measures","display_name":"An Approach to Relax the Infinite Sites Assumption in Tumor Phylogeny Distance Measures","publication_year":2022,"publication_date":"2022-12-06","ids":{"openalex":"https://openalex.org/W4313413074","doi":"https://doi.org/10.1109/bibm55620.2022.9994895"},"language":"en","primary_location":{"id":"doi:10.1109/bibm55620.2022.9994895","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9994895","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108972199","display_name":"Quoc Nguyen","orcid":"https://orcid.org/0009-0002-3316-686X"},"institutions":[{"id":"https://openalex.org/I188497080","display_name":"Carleton College","ror":"https://ror.org/03jep7677","country_code":"US","type":"education","lineage":["https://openalex.org/I188497080"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Quoc Nguyen","raw_affiliation_strings":["Carleton College,Department of Computer Science,Northfield,Minnesota,USA","Department of Computer Science, Carleton College, Northfield, Minnesota, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carleton College,Department of Computer Science,Northfield,Minnesota,USA","institution_ids":["https://openalex.org/I188497080"]},{"raw_affiliation_string":"Department of Computer Science, Carleton College, Northfield, Minnesota, USA","institution_ids":["https://openalex.org/I188497080"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082161675","display_name":"Layla Oesper","orcid":"https://orcid.org/0000-0001-6050-1948"},"institutions":[{"id":"https://openalex.org/I188497080","display_name":"Carleton College","ror":"https://ror.org/03jep7677","country_code":"US","type":"education","lineage":["https://openalex.org/I188497080"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Layla Oesper","raw_affiliation_strings":["Carleton College,Department of Computer Science,Northfield,Minnesota,USA","Department of Computer Science, Carleton College, Northfield, Minnesota, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Carleton College,Department of Computer Science,Northfield,Minnesota,USA","institution_ids":["https://openalex.org/I188497080"]},{"raw_affiliation_string":"Department of Computer Science, Carleton College, Northfield, Minnesota, USA","institution_ids":["https://openalex.org/I188497080"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I188497080"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.26829268,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"3862","last_page":"3863"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.6256869435310364},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.5698661804199219},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4588376581668854},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3708241879940033},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.36204445362091064},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2879703640937805},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21722674369812012},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1370445191860199},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07805734872817993},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07423976063728333}],"concepts":[{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.6256869435310364},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.5698661804199219},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4588376581668854},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3708241879940033},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.36204445362091064},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2879703640937805},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21722674369812012},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1370445191860199},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07805734872817993},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07423976063728333}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm55620.2022.9994895","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9994895","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2147476214","https://openalex.org/W2762185802","https://openalex.org/W2991385399"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W1923231248","https://openalex.org/W2383763250","https://openalex.org/W248275141","https://openalex.org/W2518331723"],"abstract_inverted_index":{"Tumor":[0],"phylogenies":[1,31],"representing":[2],"the":[3,37],"evolutionary":[4],"history":[5],"of":[6,30],"a":[7,17],"tumor":[8],"can":[9],"be":[10,26],"inferred":[11],"from":[12],"sequencing":[13],"data.":[14],"We":[15],"propose":[16],"matching-based":[18],"framework":[19],"which":[20],"allows":[21],"existing":[22],"distance":[23],"measures":[24],"to":[25,28,36],"applied":[27],"transformations":[29],"that":[32],"do":[33],"not":[34],"adhere":[35],"Infinite":[38],"Sites":[39],"Assumption.":[40]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}