{"id":"https://openalex.org/W4313527542","doi":"https://doi.org/10.1109/bibm55620.2022.9994894","title":"Visual Analytics Exploration of PubMLST Meningitis Genomic Data","display_name":"Visual Analytics Exploration of PubMLST Meningitis Genomic Data","publication_year":2022,"publication_date":"2022-12-06","ids":{"openalex":"https://openalex.org/W4313527542","doi":"https://doi.org/10.1109/bibm55620.2022.9994894"},"language":"en","primary_location":{"id":"doi:10.1109/bibm55620.2022.9994894","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9994894","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020030684","display_name":"Margaret Varga","orcid":"https://orcid.org/0000-0002-9086-1626"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Margaret J. Varga","raw_affiliation_strings":["University of Oxford,Department of Biology,Oxford,U.K","Department of Biology, University of Oxford, Oxford, U.K"],"affiliations":[{"raw_affiliation_string":"University of Oxford,Department of Biology,Oxford,U.K","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Biology, University of Oxford, Oxford, U.K","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024961150","display_name":"Holly B. Bratcher","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Holly B. Bratcher","raw_affiliation_strings":["University of Oxford,Department of Biology,Oxford,U.K","Department of Biology, University of Oxford, Oxford, U.K"],"affiliations":[{"raw_affiliation_string":"University of Oxford,Department of Biology,Oxford,U.K","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Biology, University of Oxford, Oxford, U.K","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043485383","display_name":"Keith A. Jolley","orcid":"https://orcid.org/0000-0002-0751-0287"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Keith A. Jolley","raw_affiliation_strings":["University of Oxford,Department of Biology,Oxford,U.K","Department of Biology, University of Oxford, Oxford, U.K"],"affiliations":[{"raw_affiliation_string":"University of Oxford,Department of Biology,Oxford,U.K","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Biology, University of Oxford, Oxford, U.K","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039827143","display_name":"Odile B. Harrison","orcid":"https://orcid.org/0000-0002-1623-0295"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Odile B. Harrison","raw_affiliation_strings":["University of Oxford,Department of Biology,Oxford,U.K","Department of Biology, University of Oxford, Oxford, U.K"],"affiliations":[{"raw_affiliation_string":"University of Oxford,Department of Biology,Oxford,U.K","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Biology, University of Oxford, Oxford, U.K","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064855716","display_name":"James E. Bray","orcid":"https://orcid.org/0000-0003-3554-4254"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James E. Bray","raw_affiliation_strings":["University of Oxford,Department of Biology,Oxford,U.K","Department of Biology, University of Oxford, Oxford, U.K"],"affiliations":[{"raw_affiliation_string":"University of Oxford,Department of Biology,Oxford,U.K","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Biology, University of Oxford, Oxford, U.K","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083239509","display_name":"Martin Maiden","orcid":"https://orcid.org/0000-0001-6321-5138"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Martin C. J. Maiden","raw_affiliation_strings":["University of Oxford,Department of Biology,Oxford,U.K","Department of Biology, University of Oxford, Oxford, U.K"],"affiliations":[{"raw_affiliation_string":"University of Oxford,Department of Biology,Oxford,U.K","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Biology, University of Oxford, Oxford, U.K","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5020030684"],"corresponding_institution_ids":["https://openalex.org/I40120149"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.46456693,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"5","issue":null,"first_page":"2871","last_page":"2878"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9488000273704529,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/neisseria-meningitidis","display_name":"Neisseria meningitidis","score":0.7386224865913391},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6233397126197815},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6151492595672607},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.5520023107528687},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5313511490821838},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.5060784220695496},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5028232932090759},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.46873077750205994},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.463352233171463},{"id":"https://openalex.org/keywords/neisseria","display_name":"Neisseria","score":0.4623410105705261},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2631511092185974},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.19427689909934998},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.18773356080055237},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15675589442253113},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.1065106987953186}],"concepts":[{"id":"https://openalex.org/C2778458888","wikidata":"https://www.wikidata.org/wiki/Q154625","display_name":"Neisseria meningitidis","level":3,"score":0.7386224865913391},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6233397126197815},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6151492595672607},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5520023107528687},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5313511490821838},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.5060784220695496},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5028232932090759},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.46873077750205994},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.463352233171463},{"id":"https://openalex.org/C2777954195","wikidata":"https://www.wikidata.org/wiki/Q132209","display_name":"Neisseria","level":3,"score":0.4623410105705261},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2631511092185974},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.19427689909934998},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.18773356080055237},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15675589442253113},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.1065106987953186},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm55620.2022.9994894","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9994894","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6000000238418579,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1532933231","https://openalex.org/W1594453896","https://openalex.org/W1988810265","https://openalex.org/W2005687031","https://openalex.org/W2052663923","https://openalex.org/W2053940732","https://openalex.org/W2142503351","https://openalex.org/W2146948159","https://openalex.org/W2159996805","https://openalex.org/W2165471800","https://openalex.org/W2166642025","https://openalex.org/W2178319051","https://openalex.org/W2336950840","https://openalex.org/W2412333841","https://openalex.org/W2513731151","https://openalex.org/W2768017947","https://openalex.org/W2891078715","https://openalex.org/W6684618151","https://openalex.org/W6715737483"],"related_works":["https://openalex.org/W1957800381","https://openalex.org/W2003004797","https://openalex.org/W2891721133","https://openalex.org/W3015036750","https://openalex.org/W3144728156","https://openalex.org/W2442696545","https://openalex.org/W2415444323","https://openalex.org/W2105599850","https://openalex.org/W2015606915","https://openalex.org/W1946524281"],"abstract_inverted_index":{"Bacterial":[0],"meningitis":[1],"is":[2,13,26,35,67,75],"an":[3,76],"infectious":[4],"disease":[5,25],"of":[6,22,51,57,79,82,96],"the":[7,27,65],"brain":[8],"that":[9],"occurs":[10],"worldwide":[11],"and":[12,49,55,62,105,111],"a":[14,37,68],"major":[15,69],"public":[16],"health":[17],"challenge.":[18],"A":[19],"leading":[20],"cause":[21],"this":[23],"often-fatal":[24],"bacterium":[28],"Neisseria":[29,113],"meningitidis,":[30],"also":[31],"called":[32],"meningococcus.":[33],"Genomics":[34],"having":[36],"transformational":[38],"impact":[39],"on":[40],"medicine.":[41],"It":[42,74],"enables":[43],"advances":[44],"in":[45],"accurate":[46],"diagnosis,":[47],"analysis":[48],"prediction":[50],"anti-microbial":[52],"resistance,":[53],"development":[54],"assessment":[56],"vaccines":[58],"etc.":[59],"PubMLST.org,":[60],"developed":[61],"run":[63],"by":[64],"authors,":[66],"open-access":[70],"genomics":[71],"reference":[72],"database.":[73],"integrated":[77],"collection":[78],"databases":[80],"consisting":[81],"phenotype":[83],"metadata":[84],"linked":[85],"to":[86,109],"nucleotide":[87],"sequence":[88],"data":[89,115],"including":[90],"genome":[91],"assemblies,":[92],"for":[93],"molecular":[94],"typing":[95],"many":[97],"bacterial":[98],"species.":[99],"This":[100],"paper":[101],"discusses":[102],"visual":[103],"analytics":[104],"visualization":[106],"work":[107],"conducted":[108],"explore":[110],"analyse":[112],"meningitidis":[114],"from":[116],"PubMLST.":[117]},"counts_by_year":[],"updated_date":"2025-12-23T23:11:35.936235","created_date":"2025-10-10T00:00:00"}
