{"id":"https://openalex.org/W4205273513","doi":"https://doi.org/10.1109/bibm52615.2021.9669880","title":"MKG: a mutual information based method to infer single cell gene regulatory network","display_name":"MKG: a mutual information based method to infer single cell gene regulatory network","publication_year":2021,"publication_date":"2021-12-09","ids":{"openalex":"https://openalex.org/W4205273513","doi":"https://doi.org/10.1109/bibm52615.2021.9669880"},"language":"en","primary_location":{"id":"doi:10.1109/bibm52615.2021.9669880","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669880","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103172407","display_name":"Yanping Zeng","orcid":"https://orcid.org/0000-0002-4339-2150"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanping Zeng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011286905","display_name":"Xuhua Yan","orcid":"https://orcid.org/0000-0002-3183-3342"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuhua Yan","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032008468","display_name":"Zhenlan Liang","orcid":"https://orcid.org/0000-0001-6556-071X"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenlan Liang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044328870","display_name":"Ruiqing Zheng","orcid":"https://orcid.org/0000-0001-6372-6798"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruiqing Zheng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"pp","issue":null,"first_page":"223","last_page":"228"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7350802421569824},{"id":"https://openalex.org/keywords/mutual-information","display_name":"Mutual information","score":0.6471508145332336},{"id":"https://openalex.org/keywords/estimator","display_name":"Estimator","score":0.5584770441055298},{"id":"https://openalex.org/keywords/stability","display_name":"Stability (learning theory)","score":0.5014734268188477},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4833785891532898},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4694000780582428},{"id":"https://openalex.org/keywords/sliding-window-protocol","display_name":"Sliding window protocol","score":0.45431825518608093},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45378372073173523},{"id":"https://openalex.org/keywords/window","display_name":"Window (computing)","score":0.44197148084640503},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.43762752413749695},{"id":"https://openalex.org/keywords/trajectory","display_name":"Trajectory","score":0.42136090993881226},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36769479513168335},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.36387842893600464},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3074776232242584},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.25782346725463867},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.23462271690368652},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1595577895641327},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14554935693740845},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.09379881620407104},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08633780479431152}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7350802421569824},{"id":"https://openalex.org/C152139883","wikidata":"https://www.wikidata.org/wiki/Q252973","display_name":"Mutual information","level":2,"score":0.6471508145332336},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.5584770441055298},{"id":"https://openalex.org/C112972136","wikidata":"https://www.wikidata.org/wiki/Q7595718","display_name":"Stability (learning theory)","level":2,"score":0.5014734268188477},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4833785891532898},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4694000780582428},{"id":"https://openalex.org/C102392041","wikidata":"https://www.wikidata.org/wiki/Q592860","display_name":"Sliding window protocol","level":3,"score":0.45431825518608093},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45378372073173523},{"id":"https://openalex.org/C2778751112","wikidata":"https://www.wikidata.org/wiki/Q835016","display_name":"Window (computing)","level":2,"score":0.44197148084640503},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.43762752413749695},{"id":"https://openalex.org/C13662910","wikidata":"https://www.wikidata.org/wiki/Q193139","display_name":"Trajectory","level":2,"score":0.42136090993881226},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36769479513168335},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.36387842893600464},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3074776232242584},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.25782346725463867},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.23462271690368652},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1595577895641327},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14554935693740845},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.09379881620407104},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08633780479431152},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm52615.2021.9669880","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669880","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321514","display_name":"Central South University","ror":"https://ror.org/00f1zfq44"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1988391018","https://openalex.org/W1994892791","https://openalex.org/W2058697900","https://openalex.org/W2062029454","https://openalex.org/W2076513103","https://openalex.org/W2092939357","https://openalex.org/W2140258573","https://openalex.org/W2290247654","https://openalex.org/W2332016763","https://openalex.org/W2337819340","https://openalex.org/W2460857593","https://openalex.org/W2465917013","https://openalex.org/W2511896561","https://openalex.org/W2561884319","https://openalex.org/W2626990934","https://openalex.org/W2750765126","https://openalex.org/W2757021802","https://openalex.org/W2757234574","https://openalex.org/W2789254933","https://openalex.org/W2803394774","https://openalex.org/W2893493339","https://openalex.org/W2900569176","https://openalex.org/W2901292166","https://openalex.org/W2914215997","https://openalex.org/W2927507212","https://openalex.org/W2951799803","https://openalex.org/W2951850020","https://openalex.org/W2952535935","https://openalex.org/W2997831639","https://openalex.org/W3036077871","https://openalex.org/W3091902852","https://openalex.org/W6744238343","https://openalex.org/W6755128102","https://openalex.org/W6758725488","https://openalex.org/W6784305532"],"related_works":["https://openalex.org/W2466816617","https://openalex.org/W2109115373","https://openalex.org/W2390901981","https://openalex.org/W1970834875","https://openalex.org/W842936808","https://openalex.org/W3174028392","https://openalex.org/W2353818951","https://openalex.org/W2000517284","https://openalex.org/W2365318811","https://openalex.org/W3014558862"],"abstract_inverted_index":{"GRN":[0],"is":[1,71,140],"the":[2,22,37,68,78,102,107,116,126,132,136,144,155],"core":[3],"of":[4,39,77,81,120,134,151],"all":[5],"living":[6],"organisms":[7],"that":[8],"can":[9],"explain":[10],"how":[11],"genes":[12],"and":[13,84,161,168],"their":[14],"products":[15],"interact":[16],"at":[17],"different":[18],"levels.":[19],"To":[20,129],"infer":[21],"potential":[23],"GRNs":[24,48],"from":[25],"gene":[26],"expression":[27,118],"data":[28],"remains":[29],"a":[30,57,92],"great":[31],"challenge":[32],"in":[33,50,87,122],"bioinformatics.":[34],"Recently,":[35],"with":[36,171],"development":[38],"single":[40],"cell":[41,46,51,54],"RNA":[42],"sequencing":[43],"technology,":[44],"inferring":[45],"specific":[47],"involving":[49],"differentiation":[52],"or":[53],"function":[55],"becomes":[56],"hot":[58],"topic.":[59],"Although":[60],"there":[61],"are":[62],"some":[63],"methods":[64],"proposed":[65],"to":[66,142,154],"accomplish":[67],"task,":[69],"it":[70],"still":[72],"less":[73],"than":[74],"ideal":[75],"because":[76],"additional":[79],"noises":[80],"pseudo":[82],"time":[83,112],"high":[85],"dropouts":[86],"datasets.":[88],"Therefore,":[89],"we":[90],"propose":[91],"time-delayed":[93,146],"mutual":[94,147],"information":[95,148],"based":[96],"method,":[97],"named":[98],"MKG.":[99],"MKG":[100,164],"handles":[101],"above":[103],"problems":[104],"by":[105],"partitioning":[106],"whole":[108],"trajectory":[109],"into":[110],"several":[111],"windows":[113],"then":[114],"takes":[115],"average":[117],"value":[119],"cells":[121],"each":[123],"window":[124],"as":[125],"representative":[127],"cell.":[128],"further":[130],"reduce":[131],"impact":[133],"dropouts,":[135],"mixed":[137],"KSG":[138],"estimator":[139],"applied":[141],"quantify":[143],"high-order":[145],"between":[149],"pairs":[150],"genes.":[152],"According":[153],"experimental":[156],"results":[157],"on":[158],"multiple":[159],"simulated":[160],"real":[162],"datasets,":[163],"has":[165],"better":[166],"performance":[167],"stability":[169],"compared":[170],"other":[172],"state-of-the-art":[173],"algorithms.":[174]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
