{"id":"https://openalex.org/W4206095767","doi":"https://doi.org/10.1109/bibm52615.2021.9669875","title":"CMIVGSD: circRNA-miRNA Interaction Prediction Based on Variational Graph Auto-Encoder and Singular Value Decomposition","display_name":"CMIVGSD: circRNA-miRNA Interaction Prediction Based on Variational Graph Auto-Encoder and Singular Value Decomposition","publication_year":2021,"publication_date":"2021-12-09","ids":{"openalex":"https://openalex.org/W4206095767","doi":"https://doi.org/10.1109/bibm52615.2021.9669875"},"language":"en","primary_location":{"id":"doi:10.1109/bibm52615.2021.9669875","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669875","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002981402","display_name":"Yurong Qian","orcid":"https://orcid.org/0000-0001-6564-4745"},"institutions":[{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yurong Qian","raw_affiliation_strings":["School of Software, Xinjiang University, Urumqi, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Xinjiang University, Urumqi, China","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051810238","display_name":"Jingjing Zheng","orcid":"https://orcid.org/0000-0002-8549-4235"},"institutions":[{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jingjing Zheng","raw_affiliation_strings":["School of Software, Xinjiang University, Urumqi, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Xinjiang University, Urumqi, China","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101834434","display_name":"Zhe Zhang","orcid":"https://orcid.org/0009-0008-2955-2235"},"institutions":[{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhe Zhang","raw_affiliation_strings":["School of Software, Xinjiang University, Urumqi, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Xinjiang University, Urumqi, China","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002133821","display_name":"Ying Jiang","orcid":"https://orcid.org/0000-0001-6269-0172"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Jiang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100628890","display_name":"Jiaxuan Zhang","orcid":"https://orcid.org/0000-0003-3212-7738"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiaxuan Zhang","raw_affiliation_strings":["Department of Cognitive Science, University of California San Diego, La Jolla, United States"],"affiliations":[{"raw_affiliation_string":"Department of Cognitive Science, University of California San Diego, La Jolla, United States","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085608332","display_name":"Lei Deng","orcid":"https://orcid.org/0000-0003-2869-1619"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Deng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5002981402"],"corresponding_institution_ids":["https://openalex.org/I96908189"],"apc_list":null,"apc_paid":null,"fwci":4.6691,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.96840149,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"205","last_page":"210"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/singular-value-decomposition","display_name":"Singular value decomposition","score":0.6933703422546387},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5235756635665894},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.49921083450317383},{"id":"https://openalex.org/keywords/decomposition","display_name":"Decomposition","score":0.4729326069355011},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.46997660398483276},{"id":"https://openalex.org/keywords/graph-theory","display_name":"Graph theory","score":0.4277052879333496},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3428635001182556},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3303777575492859},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2986072301864624},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.18984633684158325},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.06574678421020508}],"concepts":[{"id":"https://openalex.org/C22789450","wikidata":"https://www.wikidata.org/wiki/Q420904","display_name":"Singular value decomposition","level":2,"score":0.6933703422546387},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5235756635665894},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.49921083450317383},{"id":"https://openalex.org/C124681953","wikidata":"https://www.wikidata.org/wiki/Q339062","display_name":"Decomposition","level":2,"score":0.4729326069355011},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.46997660398483276},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.4277052879333496},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3428635001182556},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3303777575492859},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2986072301864624},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.18984633684158325},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.06574678421020508},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm52615.2021.9669875","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669875","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1647671624","https://openalex.org/W1678356000","https://openalex.org/W2003172650","https://openalex.org/W2004572268","https://openalex.org/W2015858554","https://openalex.org/W2017570593","https://openalex.org/W2017919052","https://openalex.org/W2024248021","https://openalex.org/W2046387002","https://openalex.org/W2077327925","https://openalex.org/W2109001898","https://openalex.org/W2115662330","https://openalex.org/W2165232178","https://openalex.org/W2575293459","https://openalex.org/W2624931807","https://openalex.org/W2768348081","https://openalex.org/W2795917293","https://openalex.org/W2807545007","https://openalex.org/W2886168762","https://openalex.org/W2886514991","https://openalex.org/W2901312953","https://openalex.org/W2913545508","https://openalex.org/W2942409680","https://openalex.org/W2944763106","https://openalex.org/W3005788621","https://openalex.org/W3034046925","https://openalex.org/W3080286031","https://openalex.org/W6636915900","https://openalex.org/W6676506722","https://openalex.org/W6780139701","https://openalex.org/W6782531509"],"related_works":["https://openalex.org/W3121932492","https://openalex.org/W4232638561","https://openalex.org/W1997544008","https://openalex.org/W2954752069","https://openalex.org/W1607100495","https://openalex.org/W4390516098","https://openalex.org/W3004137470","https://openalex.org/W131378092","https://openalex.org/W2938523900","https://openalex.org/W1598328844"],"abstract_inverted_index":{"A":[0],"large":[1],"amount":[2],"of":[3,29,135,152,195],"evidence":[4],"shows":[5],"that":[6,52,179],"circular":[7],"RNAs(circRNAs)":[8],"participate":[9],"in":[10,34,154,197],"transcription":[11],"and":[12,15,49,64,73,90,137,161,164],"translation":[13],"regulation":[14],"function":[16,28],"as":[17],"\u201cmicro":[18],"RNA(miRNA)-sponges\u201d.":[19],"Recognizing":[20],"circRNA-miRNA":[21,96,110,126,153,199],"interaction":[22,70,127,169],"is":[23,45,59,103,145,183],"helpful":[24],"to":[25,61,67,94,108,120,147,167],"understand":[26],"the":[27,69,104,114,125,132,149,193],"circRNAs,":[30],"especially":[31],"its":[32],"role":[33],"complex":[35],"diseases.":[36],"Obtaining":[37],"interactive":[38],"information":[39],"based":[40],"on":[41],"traditional":[42],"biological":[43],"experiments":[44],"usually":[46],"small-scale,":[47],"time-consuming,":[48],"laborious.":[50],"Considering":[51],"there":[53],"are":[54],"few":[55],"calculation":[56,106],"methods,":[57],"it":[58],"urgent":[60],"develop":[62],"efficient":[63],"accurate":[65],"methods":[66],"extract":[68],"between":[71],"circRNA":[72,136],"miRNA.":[74],"In":[75],"this":[76],"work,":[77],"we":[78,158],"proposed":[79,181],"a":[80],"computational":[81],"framework":[82,107],"called":[83],"CMIVGSD,":[84],"which":[85],"uses":[86,113],"singular":[87,115],"value":[88,116],"decomposition":[89,117],"graph":[91,141],"variational":[92,142],"auto-encoders":[93],"predict":[95,109,168],"interaction.":[97,111,200],"To":[98],"our":[99,180],"best":[100],"knowledge,":[101],"CMIVGSD":[102,112,196],"first":[105],"(SVD)":[118],"algorithm":[119],"obtain":[121],"linear":[122,160],"features":[123,151,163],"from":[124],"matrix.":[128],"We":[129,171],"have":[130],"constructed":[131],"similarity":[133,155],"networks":[134],"miRNA,":[138],"respectively.":[139],"The":[140,188],"auto-encoder":[143],"(VGAE)":[144],"employed":[146],"mine":[148],"non-linear":[150,162],"networks.":[156],"Finally,":[157],"combine":[159],"use":[165],"LightGBM":[166],"scores.":[170],"performed":[172],"five-fold":[173],"cross-validation":[174],"experiments.":[175],"Experimental":[176],"results":[177],"show":[178],"method":[182],"better":[184],"than":[185],"other":[186],"methods.":[187],"case":[189],"study":[190],"further":[191],"proves":[192],"effectiveness":[194],"predicting":[198]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
