{"id":"https://openalex.org/W3196944902","doi":"https://doi.org/10.1109/bibm52615.2021.9669775","title":"Variational voxelwise rs-fMRI representation learning: Evaluation of sex, age, and neuropsychiatric signatures","display_name":"Variational voxelwise rs-fMRI representation learning: Evaluation of sex, age, and neuropsychiatric signatures","publication_year":2021,"publication_date":"2021-12-09","ids":{"openalex":"https://openalex.org/W3196944902","doi":"https://doi.org/10.1109/bibm52615.2021.9669775","mag":"3196944902"},"language":"en","primary_location":{"id":"doi:10.1109/bibm52615.2021.9669775","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669775","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2108.12756","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016631801","display_name":"Eloy Geenjaar","orcid":"https://orcid.org/0000-0001-5448-6358"},"institutions":[{"id":"https://openalex.org/I98358874","display_name":"Delft University of Technology","ror":"https://ror.org/02e2c7k09","country_code":"NL","type":"education","lineage":["https://openalex.org/I98358874"]},{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["NL","US"],"is_corresponding":true,"raw_author_name":"Eloy Geenjaar","raw_affiliation_strings":["Faculty of EEMCS, Delft University of Technology, Delft, the Netherlands","#N#\u2021#N#Georgia Institute of Technology#N#"],"affiliations":[{"raw_affiliation_string":"Faculty of EEMCS, Delft University of Technology, Delft, the Netherlands","institution_ids":["https://openalex.org/I98358874"]},{"raw_affiliation_string":"#N#\u2021#N#Georgia Institute of Technology#N#","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021131032","display_name":"Tonya White","orcid":"https://orcid.org/0000-0003-0271-1896"},"institutions":[{"id":"https://openalex.org/I913958620","display_name":"Erasmus University Rotterdam","ror":"https://ror.org/057w15z03","country_code":"NL","type":"education","lineage":["https://openalex.org/I913958620"]},{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2801952686"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Tonya White","raw_affiliation_strings":["Department of Radiology and Nuclear Medicine, Erasmus MC, Rotterdam, the Netherlands","Erasmus Mc"],"affiliations":[{"raw_affiliation_string":"Department of Radiology and Nuclear Medicine, Erasmus MC, Rotterdam, the Netherlands","institution_ids":["https://openalex.org/I913958620","https://openalex.org/I2801952686"]},{"raw_affiliation_string":"Erasmus Mc","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032850756","display_name":"Vince D. Calhoun","orcid":"https://orcid.org/0000-0001-9058-0747"},"institutions":[{"id":"https://openalex.org/I150468666","display_name":"Emory University","ror":"https://ror.org/03czfpz43","country_code":"US","type":"education","lineage":["https://openalex.org/I150468666"]},{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]},{"id":"https://openalex.org/I4210133909","display_name":"Center for Translational Research in Neuroimaging and Data Science","ror":"https://ror.org/02qx6zf82","country_code":"US","type":"facility","lineage":["https://openalex.org/I130701444","https://openalex.org/I150468666","https://openalex.org/I181565077","https://openalex.org/I4210133909"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vince Calhoun","raw_affiliation_strings":["TReNDS center, GaTech, GSU, & Emory University, Atlanta, USA","Georgia State University"],"affiliations":[{"raw_affiliation_string":"TReNDS center, GaTech, GSU, & Emory University, Atlanta, USA","institution_ids":["https://openalex.org/I150468666","https://openalex.org/I4210133909"]},{"raw_affiliation_string":"Georgia State University","institution_ids":["https://openalex.org/I181565077"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5016631801"],"corresponding_institution_ids":["https://openalex.org/I130701444","https://openalex.org/I98358874"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.06090909,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"40 11","issue":null,"first_page":"1733","last_page":"1740"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.6936296224594116},{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.6535515189170837},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6312216520309448},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5514201521873474},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5174694657325745},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4743308424949646},{"id":"https://openalex.org/keywords/linear-model","display_name":"Linear model","score":0.4728417992591858},{"id":"https://openalex.org/keywords/schizophrenia","display_name":"Schizophrenia (object-oriented programming)","score":0.4559524655342102},{"id":"https://openalex.org/keywords/general-linear-model","display_name":"General linear model","score":0.434135377407074},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.3369363248348236}],"concepts":[{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.6936296224594116},{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.6535515189170837},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6312216520309448},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5514201521873474},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5174694657325745},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4743308424949646},{"id":"https://openalex.org/C163175372","wikidata":"https://www.wikidata.org/wiki/Q3339222","display_name":"Linear model","level":2,"score":0.4728417992591858},{"id":"https://openalex.org/C2776412080","wikidata":"https://www.wikidata.org/wiki/Q7431605","display_name":"Schizophrenia (object-oriented programming)","level":2,"score":0.4559524655342102},{"id":"https://openalex.org/C188321436","wikidata":"https://www.wikidata.org/wiki/Q1826488","display_name":"General linear model","level":3,"score":0.434135377407074},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.3369363248348236},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1109/bibm52615.2021.9669775","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669775","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.eur.nl:openaire_cris_publications/c011032f-2126-41c9-b1e9-aed3448c7e04","is_oa":false,"landing_page_url":"https://pure.eur.nl/en/publications/c011032f-2126-41c9-b1e9-aed3448c7e04","pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Geenjaar, E, White, T & Calhoun, V 2021, 'Variational voxelwise rs-fMRI representation learning : Evaluation of sex, age, and neuropsychiatric signatures', Proceedings - 2021 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2021, pp. 1733-1740. https://doi.org/10.1109/BIBM52615.2021.9669775","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:arXiv.org:2108.12756","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2108.12756","pdf_url":"https://arxiv.org/pdf/2108.12756","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:3196944902","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/2108.12756","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.2108.12756","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2108.12756","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2108.12756","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2108.12756","pdf_url":"https://arxiv.org/pdf/2108.12756","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3196944902.pdf","grobid_xml":"https://content.openalex.org/works/W3196944902.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1943480391","https://openalex.org/W2013228103","https://openalex.org/W2056269711","https://openalex.org/W2058187841","https://openalex.org/W2064675550","https://openalex.org/W2095705004","https://openalex.org/W2101234009","https://openalex.org/W2103402739","https://openalex.org/W2110569316","https://openalex.org/W2137983211","https://openalex.org/W2146292423","https://openalex.org/W2163605009","https://openalex.org/W2176412452","https://openalex.org/W2194775991","https://openalex.org/W2516718464","https://openalex.org/W2522628945","https://openalex.org/W2587284713","https://openalex.org/W2606321545","https://openalex.org/W2889473801","https://openalex.org/W2931005391","https://openalex.org/W2931459879","https://openalex.org/W2951004968","https://openalex.org/W2963685250","https://openalex.org/W2964300317","https://openalex.org/W2968131493","https://openalex.org/W2970971581","https://openalex.org/W3008923041","https://openalex.org/W3012412627","https://openalex.org/W3028541459","https://openalex.org/W3042248181","https://openalex.org/W3046675286","https://openalex.org/W3048396787","https://openalex.org/W3092996470","https://openalex.org/W3121045849","https://openalex.org/W3140968660","https://openalex.org/W3146803896","https://openalex.org/W3185054068","https://openalex.org/W3203322852","https://openalex.org/W4200108987","https://openalex.org/W6631190155","https://openalex.org/W6640963894","https://openalex.org/W6674330103","https://openalex.org/W6675354045","https://openalex.org/W6680300913","https://openalex.org/W6684191040","https://openalex.org/W6685562342","https://openalex.org/W6695676441","https://openalex.org/W6726296085","https://openalex.org/W6733471323","https://openalex.org/W6766978945","https://openalex.org/W6780326995"],"related_works":["https://openalex.org/W2807933635","https://openalex.org/W3113101172","https://openalex.org/W2953821211","https://openalex.org/W2490180979","https://openalex.org/W3101653779","https://openalex.org/W2564759046","https://openalex.org/W2786407077","https://openalex.org/W2625286621","https://openalex.org/W3025027487","https://openalex.org/W2257942484","https://openalex.org/W91183886","https://openalex.org/W2087385620","https://openalex.org/W2970436728","https://openalex.org/W3082581037","https://openalex.org/W2024937190","https://openalex.org/W2775776780","https://openalex.org/W290923189","https://openalex.org/W2946763314","https://openalex.org/W2893415555","https://openalex.org/W2954026963"],"abstract_inverted_index":{"This":[0],"work":[1,207],"uses":[2],"a":[3,19,30,41,79,95,122,127,145,193],"variational":[4],"autoencoder":[5],"(VAE)":[6],"to":[7,40,87,185],"perform":[8],"non-linear":[9,20],"representation":[10],"learning":[11],"from":[12],"voxelwise":[13,229],"rs-fMRI":[14,230],"data.":[15,231],"The":[16,47,70,110,132,202],"VAE":[17,220],"learns":[18],"dimensionality":[21],"reduction":[22],"of":[23,29,49,130,163,179,195,216],"the":[24,27,53,66,84,100,154,161,164,169,177,180,199,214,219],"data":[25],"in":[26,52,205],"form":[28],"latent":[31,34,54,85,102,133,165,181,200],"vector.":[32],"These":[33],"vectors":[35,55,86,103,134,166,170,182],"retain":[36],"meaningful":[37,50],"information":[38,51],"related":[39],"subject\u2019s":[42],"demographics":[43],"and":[44,61,78,167,222],"clinical":[45],"diagnosis.":[46],"retention":[48],"is":[56,113,118],"evaluated":[57,142],"using":[58],"age":[59,89],"regression":[60],"sex":[62],"classification":[63,148],"tasks":[64,74],"on":[65,72,83,92,115,121,156,198],"UK":[67,116,157],"Biobank":[68,117,158],"dataset.":[69],"results":[71,203],"these":[73],"are":[75,140,172],"highly":[76],"encouraging":[77],"linear":[80],"regressor":[81],"trained":[82],"predict":[88],"performs":[90],"almost":[91,105],"par":[93],"with":[94,183],"supervised":[96,196],"neural":[97],"network.":[98],"Further,":[99],"same":[101],"can":[104,225],"perfectly":[106],"linearly":[107],"separate":[108],"sex.":[109],"model":[111,155],"that":[112,152,168,218],"pre-trained":[114],"also":[119],"fine-tuned":[120],"smaller":[123],"neuropsychiatric":[124,189],"dataset":[125,139],"for":[126,137,228],"varying":[128],"number":[129],"epochs.":[131],"it":[135],"generates":[136],"this":[138,206],"then":[141],"by":[143],"performing":[144],"schizophrenia":[146],"diagnosis":[147],"task.":[149],"We":[150],"find":[151],"pre-training":[153],"significantly":[159],"improves":[160],"quality":[162],"themselves":[171],"fairly":[173],"discriminative.":[174],"To":[175],"understand":[176],"structure":[178],"respect":[184],"demographic":[186],"variables":[187],"or":[188],"disorders":[190],"we":[191],"train":[192],"variety":[194],"models":[197,221],"vectors.":[201],"presented":[204],"open":[208],"up":[209],"more":[210],"in-depth":[211],"research":[212],"into":[213],"factors":[215],"variation":[217],"how":[223],"they":[224],"be":[226],"improved":[227]},"counts_by_year":[],"updated_date":"2026-03-21T08:13:44.787528","created_date":"2022-07-25T00:00:00"}
