{"id":"https://openalex.org/W4205631594","doi":"https://doi.org/10.1109/bibm52615.2021.9669749","title":"Co-Attentive Span Network with Multi-task learning for Biomedical Named Entity Recognition","display_name":"Co-Attentive Span Network with Multi-task learning for Biomedical Named Entity Recognition","publication_year":2021,"publication_date":"2021-12-09","ids":{"openalex":"https://openalex.org/W4205631594","doi":"https://doi.org/10.1109/bibm52615.2021.9669749"},"language":"en","primary_location":{"id":"doi:10.1109/bibm52615.2021.9669749","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669749","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100676478","display_name":"Peng Chen","orcid":"https://orcid.org/0000-0002-7120-1577"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Chen","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100370523","display_name":"Jian Wang","orcid":"https://orcid.org/0000-0002-9849-7558"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Wang","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023931221","display_name":"Hongfei Lin","orcid":"https://orcid.org/0000-0003-0872-7688"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfei Lin","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046020427","display_name":"Yijia Zhang","orcid":"https://orcid.org/0000-0002-5843-4675"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yijia Zhang","raw_affiliation_strings":["School of Information Science and Technology, Dalian Maritime University, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Technology, Dalian Maritime University, Dalian, China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051597671","display_name":"Zhihao Yang","orcid":"https://orcid.org/0000-0001-6186-2024"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihao Yang","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017835678","display_name":"Di Zhao","orcid":"https://orcid.org/0000-0002-0876-5126"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Di Zhao","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100452344","display_name":"Hui Ma","orcid":"https://orcid.org/0000-0002-7146-8036"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hui Ma","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"85","issue":null,"first_page":"649","last_page":"652"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9786999821662903,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7848607897758484},{"id":"https://openalex.org/keywords/sequence-labeling","display_name":"Sequence labeling","score":0.7440173625946045},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.7368259429931641},{"id":"https://openalex.org/keywords/security-token","display_name":"Security token","score":0.7216696739196777},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.698718249797821},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.6909424662590027},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.6436880826950073},{"id":"https://openalex.org/keywords/span","display_name":"Span (engineering)","score":0.5933982729911804},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5903855562210083},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5708757638931274},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.47002124786376953},{"id":"https://openalex.org/keywords/question-answering","display_name":"Question answering","score":0.4418536424636841},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4267823100090027},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.06506970524787903}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7848607897758484},{"id":"https://openalex.org/C35639132","wikidata":"https://www.wikidata.org/wiki/Q7452468","display_name":"Sequence labeling","level":3,"score":0.7440173625946045},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.7368259429931641},{"id":"https://openalex.org/C48145219","wikidata":"https://www.wikidata.org/wiki/Q1335365","display_name":"Security token","level":2,"score":0.7216696739196777},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.698718249797821},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.6909424662590027},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.6436880826950073},{"id":"https://openalex.org/C2778753569","wikidata":"https://www.wikidata.org/wiki/Q1960395","display_name":"Span (engineering)","level":2,"score":0.5933982729911804},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5903855562210083},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5708757638931274},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.47002124786376953},{"id":"https://openalex.org/C44291984","wikidata":"https://www.wikidata.org/wiki/Q1074173","display_name":"Question answering","level":2,"score":0.4418536424636841},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4267823100090027},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.06506970524787903},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C147176958","wikidata":"https://www.wikidata.org/wiki/Q77590","display_name":"Civil engineering","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm52615.2021.9669749","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669749","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.47999998927116394,"display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W639708223","https://openalex.org/W2047782770","https://openalex.org/W2147880316","https://openalex.org/W2149151184","https://openalex.org/W2154142897","https://openalex.org/W2169099542","https://openalex.org/W2604019706","https://openalex.org/W2734608416","https://openalex.org/W2743028754","https://openalex.org/W2769387903","https://openalex.org/W2887593177","https://openalex.org/W2890830728","https://openalex.org/W2908510526","https://openalex.org/W2911489562","https://openalex.org/W2963339489","https://openalex.org/W3004047707","https://openalex.org/W3006948250","https://openalex.org/W3126771798","https://openalex.org/W6620707391","https://openalex.org/W6682082992","https://openalex.org/W6753894142","https://openalex.org/W6757817989","https://openalex.org/W6758293299"],"related_works":["https://openalex.org/W3198803088","https://openalex.org/W3107474891","https://openalex.org/W3080496452","https://openalex.org/W147166030","https://openalex.org/W2988999299","https://openalex.org/W3198957374","https://openalex.org/W2947903144","https://openalex.org/W3022937510","https://openalex.org/W4322096459","https://openalex.org/W4205631594"],"abstract_inverted_index":{"Biomedical":[0],"Named":[1],"Entity":[2],"Recognition":[3],"(BioNER)":[4],"is":[5],"often":[6,34],"modeled":[7],"as":[8,80,106],"a":[9,46,81,91,112],"sequence":[10,55],"labeling":[11,28],"task,":[12],"which":[13],"assigns":[14],"the":[15,41,78,118],"predefined":[16],"label":[17,59,105],"to":[18,36,96,116],"each":[19],"token":[20],"in":[21,65,152],"given":[22],"input":[23],"sequence.":[24],"Although":[25],"these":[26,63],"sequential":[27],"models":[29],"achieve":[30],"significant":[31],"achievements,":[32],"they":[33],"fail":[35],"give":[37],"precise":[38],"boundaries":[39],"of":[40,49,84,154],"named":[42,72],"entity.":[43],"In":[44,94],"addition,":[45],"vast":[47],"amount":[48],"work":[50],"focuses":[51],"more":[52],"on":[53,126,144],"textual":[54],"representation":[56],"but":[57],"ignores":[58],"information.":[60],"To":[61],"tackle":[62],"problems,":[64],"this":[66],"paper,":[67],"we":[68,76,100],"directly":[69],"model":[70],"span-level":[71],"entity":[73,103],"recognition,":[74],"specifically,":[75],"treat":[77],"BioNER":[79],"joint":[82],"task":[83],"boundary":[85,98],"detection":[86],"and":[87,110,142,148],"span":[88,119],"classification":[89],"under":[90],"multitask":[92],"framework.":[93],"order":[95],"enhance":[97],"supervision,":[99],"introduce":[101],"an":[102,107],"type":[104],"additional":[108],"guide":[109],"propose":[111],"co-attentive":[113],"interactive":[114],"mechanism":[115],"improve":[117],"representation.":[120],"Extensive":[121],"experiments":[122],"<sup":[123],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[124],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">1</sup>":[125],"four":[127],"benchmark":[128],"datasets":[129],"demonstrate":[130],"that":[131],"our":[132],"proposed":[133],"method":[134],"obtains":[135],"competitive":[136],"results,":[137],"achieving":[138],"90.26%,":[139],"78.04%,":[140],"90.21%,":[141],"86.58%":[143],"BC5CDR,":[145],"JNLPBA,":[146],"NCBI,":[147],"BC2GM":[149],"datasets,":[150],"respectively,":[151],"terms":[153],"F1":[155],"score.":[156]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
