{"id":"https://openalex.org/W4205927500","doi":"https://doi.org/10.1109/bibm52615.2021.9669721","title":"Transfer Learning for Gene Ranking across Cancers","display_name":"Transfer Learning for Gene Ranking across Cancers","publication_year":2021,"publication_date":"2021-12-09","ids":{"openalex":"https://openalex.org/W4205927500","doi":"https://doi.org/10.1109/bibm52615.2021.9669721"},"language":"en","primary_location":{"id":"doi:10.1109/bibm52615.2021.9669721","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669721","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034556306","display_name":"Fei Song","orcid":"https://orcid.org/0000-0003-4091-140X"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Fei Song","raw_affiliation_strings":["School of Comp. Sci. and Tech., Xidian University, Xi\u2019an, Shaanxi, China","School of Comp. Sci. and Tech., Xidian University, Xi'an, Shaanxi, China"],"affiliations":[{"raw_affiliation_string":"School of Comp. Sci. and Tech., Xidian University, Xi\u2019an, Shaanxi, China","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"School of Comp. Sci. and Tech., Xidian University, Xi'an, Shaanxi, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088563078","display_name":"Xiaogang Liu","orcid":"https://orcid.org/0000-0002-0266-9774"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaogang Liu","raw_affiliation_strings":["School of Math. and Stat., Northwestern Polytechnical University, Xi\u2019an, Shaanxi, China","School of Math. and Stat., Northwestern Polytechnical University, Xi'an, Shaanxi, China"],"affiliations":[{"raw_affiliation_string":"School of Math. and Stat., Northwestern Polytechnical University, Xi\u2019an, Shaanxi, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Math. and Stat., Northwestern Polytechnical University, Xi'an, Shaanxi, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029088205","display_name":"Xiaoke Ma","orcid":"https://orcid.org/0000-0002-5604-7137"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoke Ma","raw_affiliation_strings":["School of Comp. Sci. and Tech., Xidian University, Xi\u2019an, Shaanxi, China","School of Comp. Sci. and Tech., Xidian University, Xi'an, Shaanxi, China"],"affiliations":[{"raw_affiliation_string":"School of Comp. Sci. and Tech., Xidian University, Xi\u2019an, Shaanxi, China","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"School of Comp. Sci. and Tech., Xidian University, Xi'an, Shaanxi, China","institution_ids":["https://openalex.org/I149594827"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5034556306"],"corresponding_institution_ids":["https://openalex.org/I149594827"],"apc_list":null,"apc_paid":null,"fwci":0.5188,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.56784387,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"10","issue":null,"first_page":"1886","last_page":"1891"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6433019638061523},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5735454559326172},{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.5392659306526184},{"id":"https://openalex.org/keywords/gene-transfer","display_name":"Gene transfer","score":0.49267107248306274},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.39807620644569397},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3915638327598572},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.37616804242134094},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.347496896982193},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2514581084251404},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18023443222045898}],"concepts":[{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6433019638061523},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5735454559326172},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.5392659306526184},{"id":"https://openalex.org/C3018928802","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Gene transfer","level":3,"score":0.49267107248306274},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.39807620644569397},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3915638327598572},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.37616804242134094},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.347496896982193},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2514581084251404},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18023443222045898}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm52615.2021.9669721","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669721","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1854214752","https://openalex.org/W1902027874","https://openalex.org/W1965008649","https://openalex.org/W1978807862","https://openalex.org/W2038122249","https://openalex.org/W2079364348","https://openalex.org/W2080240378","https://openalex.org/W2097498614","https://openalex.org/W2099656145","https://openalex.org/W2118607021","https://openalex.org/W2119220491","https://openalex.org/W2122838433","https://openalex.org/W2124649657","https://openalex.org/W2127094227","https://openalex.org/W2128245545","https://openalex.org/W2129172946","https://openalex.org/W2160198684","https://openalex.org/W2167686991","https://openalex.org/W2326887180","https://openalex.org/W2343509590","https://openalex.org/W2624021832","https://openalex.org/W2789374663","https://openalex.org/W2796679234","https://openalex.org/W2921065608","https://openalex.org/W2950834624","https://openalex.org/W3005093584","https://openalex.org/W3014623641","https://openalex.org/W3196076186","https://openalex.org/W3201206168","https://openalex.org/W6639055396","https://openalex.org/W6760251366"],"related_works":["https://openalex.org/W2188500270","https://openalex.org/W2303858293","https://openalex.org/W2915512527","https://openalex.org/W51364034","https://openalex.org/W3201126466","https://openalex.org/W2793336762","https://openalex.org/W2091548507","https://openalex.org/W2368816706","https://openalex.org/W3159414774","https://openalex.org/W4385728102"],"abstract_inverted_index":{"Understanding":[0],"the":[1,4,8,31,75,89,104,108,114,149,159],"mechanisms":[2],"of":[3,44],"disease":[5],"and":[6,18,28,35,52,91,107,120,161,177],"discovering":[7],"underlying":[9],"pathogenic":[10],"genes":[11,27,140,176],"is":[12,22,67,152],"very":[13],"important":[14],"for":[15,78],"human":[16],"health":[17],"applications.":[19],"Therefore,":[20],"it":[21],"vital":[23],"to":[24,124,171],"rank":[25],"potential":[26],"find":[29,172],"out":[30],"interrelationships":[32,174],"between":[33,175],"diseases":[34],"genes.":[36],"Current":[37],"algorithms":[38],"rely":[39],"heavily":[40],"on":[41,158],"different":[42],"types":[43],"biological":[45,50],"networks,":[46],"which":[47],"come":[48],"from":[49],"experiments":[51],"related":[53],"literature.":[54],"As":[55],"a":[56,168],"result,":[57],"they":[58],"will":[59],"get":[60],"unsatisfactory":[61],"results":[62,146],"when":[63],"similar":[64,178],"diseases\u2019":[65],"information":[66,119],"insufficient.":[68],"To":[69],"overcome":[70],"this":[71],"problem,":[72],"we":[73,138],"propose":[74],"Transfer":[76],"Learning":[77],"Gene":[79],"Ranking":[80],"across":[81],"Cancers":[82],"algorithm":[83,151],"(called":[84],"GRTL).":[85],"Specifically,":[86],"GRTL":[87,128],"decomposes":[88],"source":[90],"target":[92],"gene":[93,142],"expression":[94],"data":[95],"jointly.":[96],"The":[97,164],"feature":[98],"matrices":[99],"are":[100],"also":[101,112],"decomposed":[102],"into":[103],"shared":[105],"part":[106,116],"special":[109,115],"part.":[110],"We":[111],"constrain":[113],"with":[117,141],"label":[118],"let":[121],"them":[122],"orthogonal":[123],"ensure":[125],"diversity.":[126],"Then,":[127],"automatically":[129],"learns":[130],"an":[131],"affinity":[132],"graph":[133],"via":[134],"common":[135],"knowledge.":[136],"Finally,":[137],"prioritize":[139],"ranking":[143],"algorithm.":[144],"Experimental":[145],"demonstrate":[147],"that":[148],"proposed":[150,165],"more":[153],"accurate":[154],"than":[155],"state-of-the-art":[156],"methods":[157],"mutation":[160],"cancer":[162],"dataset.":[163],"model":[166],"provides":[167],"novel":[169],"way":[170],"new":[173],"diseases.":[179]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
