{"id":"https://openalex.org/W4206342372","doi":"https://doi.org/10.1109/bibm52615.2021.9669407","title":"Leveraging non-lattice subgraphs for suggestion of new concepts for SNOMED CT","display_name":"Leveraging non-lattice subgraphs for suggestion of new concepts for SNOMED CT","publication_year":2021,"publication_date":"2021-12-09","ids":{"openalex":"https://openalex.org/W4206342372","doi":"https://doi.org/10.1109/bibm52615.2021.9669407","pmid":"https://pubmed.ncbi.nlm.nih.gov/35291311"},"language":"en","primary_location":{"id":"doi:10.1109/bibm52615.2021.9669407","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669407","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8919474","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018015940","display_name":"Xubing Hao","orcid":"https://orcid.org/0000-0003-2207-4097"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Xubing Hao","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083171882","display_name":"Rashmie Abeysinghe","orcid":"https://orcid.org/0000-0001-9297-9540"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rashmie Abeysinghe","raw_affiliation_strings":["Department of Neurology, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurology, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028369209","display_name":"Fengbo Zheng","orcid":"https://orcid.org/0000-0001-5902-0186"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fengbo Zheng","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049834185","display_name":"Licong Cui","orcid":"https://orcid.org/0000-0001-5549-8780"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Licong Cui","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, Texas, USA","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5018015940"],"corresponding_institution_ids":["https://openalex.org/I919571938"],"apc_list":null,"apc_paid":null,"fwci":3.1408,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.92876966,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"2021","issue":null,"first_page":"1805","last_page":"1812"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12881","display_name":"linguistics and terminology studies","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1203","display_name":"Language and Linguistics"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.9572853446006775},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.8729578256607056},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7004035115242004},{"id":"https://openalex.org/keywords/systematized-nomenclature-of-medicine","display_name":"Systematized Nomenclature of Medicine","score":0.6395455002784729},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5727894902229309},{"id":"https://openalex.org/keywords/intersection","display_name":"Intersection (aeronautics)","score":0.567158579826355},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5385623574256897},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5370492339134216},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.4822971820831299},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.4437517821788788},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.40735045075416565},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34427183866500854},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.14421570301055908},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.10886034369468689},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.07338431477546692}],"concepts":[{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.9572853446006775},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.8729578256607056},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7004035115242004},{"id":"https://openalex.org/C44681071","wikidata":"https://www.wikidata.org/wiki/Q4048820","display_name":"Systematized Nomenclature of Medicine","level":4,"score":0.6395455002784729},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5727894902229309},{"id":"https://openalex.org/C64543145","wikidata":"https://www.wikidata.org/wiki/Q162942","display_name":"Intersection (aeronautics)","level":2,"score":0.567158579826355},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5385623574256897},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5370492339134216},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.4822971820831299},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.4437517821788788},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40735045075416565},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34427183866500854},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.14421570301055908},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.10886034369468689},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.07338431477546692},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibm52615.2021.9669407","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669407","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmid:35291311","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35291311","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. IEEE International Conference on Bioinformatics and Biomedicine","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8919474","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8919474","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings (IEEE Int Conf Bioinformatics Biomed)","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8919474","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8919474","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings (IEEE Int Conf Bioinformatics Biomed)","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.800000011920929}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320338440","display_name":"HORIZON EUROPE Health","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W53277779","https://openalex.org/W117186093","https://openalex.org/W172058714","https://openalex.org/W192568538","https://openalex.org/W1496540677","https://openalex.org/W2002905189","https://openalex.org/W2026606888","https://openalex.org/W2065506089","https://openalex.org/W2150771407","https://openalex.org/W2156997379","https://openalex.org/W2159583324","https://openalex.org/W2161778764","https://openalex.org/W2181840692","https://openalex.org/W2291645355","https://openalex.org/W2401602719","https://openalex.org/W2409222806","https://openalex.org/W2416471103","https://openalex.org/W2591123247","https://openalex.org/W2620729021","https://openalex.org/W2764793066","https://openalex.org/W2785571806","https://openalex.org/W2786584201","https://openalex.org/W2790678431","https://openalex.org/W2791800558","https://openalex.org/W2809105567","https://openalex.org/W2975902974","https://openalex.org/W2987799132","https://openalex.org/W3024134052","https://openalex.org/W3025959144","https://openalex.org/W3094055973","https://openalex.org/W3127913926","https://openalex.org/W3127986940","https://openalex.org/W3212547562","https://openalex.org/W6604804359","https://openalex.org/W6686033761","https://openalex.org/W6714818355","https://openalex.org/W6739085955","https://openalex.org/W6745180583","https://openalex.org/W6748198252","https://openalex.org/W6769753813","https://openalex.org/W6777063140","https://openalex.org/W6777766329"],"related_works":["https://openalex.org/W2181479088","https://openalex.org/W1968074467","https://openalex.org/W2010248145","https://openalex.org/W2037829818","https://openalex.org/W1485513899","https://openalex.org/W1682743535","https://openalex.org/W2150771407","https://openalex.org/W2044298438","https://openalex.org/W3026755508","https://openalex.org/W4206342372"],"abstract_inverted_index":{"relations":[0],"in":[1,21,42,64,111,120],"biomedical":[2,22],"ontologies":[3],"like":[4],"SNOMED":[5,43,131,170],"CT.":[6,44,171],"However,":[7],"little":[8],"is":[9],"known":[10],"about":[11],"non-lattice":[12,35,65,158],"subgraphs'":[13],"capability":[14],"to":[15,37,70,125,163],"uncover":[16],"new":[17,72,100,167],"or":[18],"missing":[19,40,139],"concepts":[20,41,51,168],"ontologies.":[23],"In":[24],"this":[25,123],"work,":[26],"we":[27,58,80,135],"investigate":[28],"a":[29],"lexical-based":[30],"intersection":[31,84,94],"approach":[32,124],"based":[33,85],"on":[34,86],"subgraphs":[36,66,159],"identify":[38],"potential":[39,99,138,162],"We":[45,104],"first":[46],"construct":[47],"lexical":[48,90],"features":[49],"of":[50,78,130,166],"using":[52],"their":[53],"fully":[54],"specified":[55],"names.":[56],"Then":[57],"generate":[59],"hierarchically":[60],"unrelated":[61],"concept":[62,101],"pairs":[63],"as":[67,97],"the":[68,87,93,98,112,126,161],"candidates":[69],"derive":[71],"concepts.":[73],"For":[74],"each":[75],"candidate":[76],"pair":[77],"concepts,":[79,140],"conduct":[81],"an":[82],"order-preserving":[83],"two":[88],"concepts'":[89],"features,":[91],"with":[92],"result":[95],"serving":[96],"name":[102],"suggested.":[103],"further":[105],"perform":[106],"automatic":[107],"validation":[108],"through":[109,146,152],"terminologies":[110],"Unified":[113],"Medical":[114],"Language":[115],"System":[116],"(UMLS)":[117],"and":[118,148],"literature":[119],"PubMed.":[121,153],"Applying":[122],"March":[127],"2021":[128],"release":[129],"CT":[132],"US":[133],"Edition,":[134],"obtained":[136],"7,702":[137],"among":[141],"which":[142],"1,288":[143],"were":[144,150],"validated":[145,151],"UMLS":[147],"1,309":[149],"The":[154],"results":[155],"showed":[156],"that":[157],"have":[160],"facilitate":[164],"suggestion":[165],"for":[169]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3}],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2025-10-10T00:00:00"}
