{"id":"https://openalex.org/W4206034482","doi":"https://doi.org/10.1109/bibm52615.2021.9669329","title":"Exploring Sentiment as a Potential Indicator of Bias in Disease Ontologies","display_name":"Exploring Sentiment as a Potential Indicator of Bias in Disease Ontologies","publication_year":2021,"publication_date":"2021-12-09","ids":{"openalex":"https://openalex.org/W4206034482","doi":"https://doi.org/10.1109/bibm52615.2021.9669329"},"language":"en","primary_location":{"id":"doi:10.1109/bibm52615.2021.9669329","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669329","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064709498","display_name":"Luke T. Slater","orcid":"https://orcid.org/0000-0001-9227-0670"},"institutions":[{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]},{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Luke T. Slater","raw_affiliation_strings":["Institute of Cancer and Genomics University of Birmingham, Birmingham, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Institute of Cancer and Genomics University of Birmingham, Birmingham, United Kingdom","institution_ids":["https://openalex.org/I79619799","https://openalex.org/I4210151791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060048919","display_name":"John A. Williams","orcid":"https://orcid.org/0000-0002-0357-5454"},"institutions":[{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]},{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John A. Williams","raw_affiliation_strings":["Institute of Cancer and Genomics University of Birmingham, Birmingham, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Institute of Cancer and Genomics University of Birmingham, Birmingham, United Kingdom","institution_ids":["https://openalex.org/I79619799","https://openalex.org/I4210151791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059588755","display_name":"Paul N. Schofield","orcid":"https://orcid.org/0000-0002-5111-7263"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul N. Schofield","raw_affiliation_strings":["Dept. of Physiology, Development and Neuroscience University of Cambridge, Cambridge, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Dept. of Physiology, Development and Neuroscience University of Cambridge, Cambridge, United Kingdom","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089900113","display_name":"Georgios V. Gkoutos","orcid":"https://orcid.org/0000-0002-2061-091X"},"institutions":[{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]},{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Georgios V. Gkoutos","raw_affiliation_strings":["Institute of Cancer and Genomics University of Birmingham, Birmingham, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Institute of Cancer and Genomics University of Birmingham, Birmingham, United Kingdom","institution_ids":["https://openalex.org/I79619799","https://openalex.org/I4210151791"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5064709498"],"corresponding_institution_ids":["https://openalex.org/I4210151791","https://openalex.org/I79619799"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.31822387,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"1826","last_page":"1834"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.8928667306900024},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8304425477981567},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8160647749900818},{"id":"https://openalex.org/keywords/sentiment-analysis","display_name":"Sentiment analysis","score":0.6349698305130005},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.595421552658081},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5835644602775574},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5664240121841431},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5659681558609009},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4812485873699188},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.44380098581314087},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4099719524383545},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.34217754006385803},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.21025928854942322},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.16352340579032898}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.8928667306900024},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8304425477981567},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8160647749900818},{"id":"https://openalex.org/C66402592","wikidata":"https://www.wikidata.org/wiki/Q2271421","display_name":"Sentiment analysis","level":2,"score":0.6349698305130005},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.595421552658081},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5835644602775574},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5664240121841431},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5659681558609009},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4812485873699188},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.44380098581314087},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4099719524383545},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.34217754006385803},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.21025928854942322},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.16352340579032898},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm52615.2021.9669329","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669329","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/675034","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/675034","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.800000011920929,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320314731","display_name":"UK Research and Innovation","ror":"https://ror.org/001aqnf71"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320336705","display_name":"Birmingham Biomedical Research Centre","ror":"https://ror.org/05ccjmp23"},{"id":"https://openalex.org/F4320338440","display_name":"HORIZON EUROPE Health","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W55962619","https://openalex.org/W90362830","https://openalex.org/W310531398","https://openalex.org/W1486848945","https://openalex.org/W1969298821","https://openalex.org/W1974896839","https://openalex.org/W1985892520","https://openalex.org/W1992099500","https://openalex.org/W2014742673","https://openalex.org/W2050483556","https://openalex.org/W2059008646","https://openalex.org/W2090190388","https://openalex.org/W2102117374","https://openalex.org/W2113142309","https://openalex.org/W2119412782","https://openalex.org/W2123442489","https://openalex.org/W2126890920","https://openalex.org/W2128092605","https://openalex.org/W2146495783","https://openalex.org/W2150838562","https://openalex.org/W2159092541","https://openalex.org/W2159583324","https://openalex.org/W2168907099","https://openalex.org/W2251939518","https://openalex.org/W2293058587","https://openalex.org/W2320397533","https://openalex.org/W2802673730","https://openalex.org/W2899915536","https://openalex.org/W2924308178","https://openalex.org/W2941748305","https://openalex.org/W2953607827","https://openalex.org/W2954510611","https://openalex.org/W2956996388","https://openalex.org/W2962969117","https://openalex.org/W2963104256","https://openalex.org/W2963923670","https://openalex.org/W2964163406","https://openalex.org/W3003173133","https://openalex.org/W3010145745","https://openalex.org/W3017366096","https://openalex.org/W3022102674","https://openalex.org/W3047267502","https://openalex.org/W3109403988","https://openalex.org/W3111550798","https://openalex.org/W3137333688","https://openalex.org/W3144777997","https://openalex.org/W3210128495","https://openalex.org/W4212919921","https://openalex.org/W4251262762","https://openalex.org/W6603694148","https://openalex.org/W6637414954","https://openalex.org/W6691459498","https://openalex.org/W6756202681","https://openalex.org/W6776778177","https://openalex.org/W6781525634","https://openalex.org/W6791709389"],"related_works":["https://openalex.org/W1506177826","https://openalex.org/W2726617685","https://openalex.org/W2127299687","https://openalex.org/W2111194626","https://openalex.org/W1562796463","https://openalex.org/W2399880385","https://openalex.org/W2397553363","https://openalex.org/W1794266373","https://openalex.org/W2074013882","https://openalex.org/W4206428734"],"abstract_inverted_index":{"Ontologies":[0],"are":[1,48],"fundamental":[2],"tools":[3],"for":[4,26,118],"the":[5,55,77,92,101,226,247],"organisation":[6],"and":[7,24,43,59,69,82,160,166,178,204,217,228,238],"analysis":[8,138,233],"of":[9,13,37,79,94,103,108,143,155,182,220,230,241,249],"biomedical":[10,236],"data.":[11],"One":[12],"their":[14],"roles":[15],"is":[16],"as":[17,139],"controlled":[18],"domain":[19,28],"vocabularies,":[20],"providing":[21],"standardised":[22],"language":[23,39],"categorisation":[25],"relevant":[27],"concepts.":[29,96],"As":[30],"such,":[31],"ontologies":[32],"frequently":[33],"include":[34],"a":[35,140,180,209],"wealth":[36],"natural":[38],"metadata":[40,47,75],"including":[41],"labels":[42],"definitions.":[44,148],"Since":[45],"these":[46,74,95,174],"usually":[49],"created":[50],"by":[51],"humans,":[52],"there":[53,112],"exists":[54],"possibility":[56,102],"that":[57,211],"conscious":[58],"unconscious":[60],"biases":[61,85],"may":[62,88],"be":[63,196,213],"reflected":[64],"in":[65,105,125,145,246],"them.":[66,171],"Moreover,":[67],"humans":[68],"computers":[70],"engage":[71],"directly":[72],"with":[73],"during":[76],"course":[78],"scientific":[80],"practice,":[81],"therefore":[83],"any":[84],"or":[86,120],"idiosyncrasies":[87],"influence":[89],"work":[90,98],"involving":[91],"use":[93,152,173],"Previous":[97],"has":[99],"exposed":[100],"bias":[104,124,144,242],"ontological":[106],"representations":[107],"disease":[109,156],"domains,":[110],"however":[111],"have":[113],"been":[114],"no":[115],"methods":[116],"developed":[117],"automatic":[119],"semiautomatic":[121],"guidance":[122],"towards":[123,202],"ontology":[126,146,200,221],"metadata.":[127,222],"In":[128],"this":[129],"article,":[130],"we":[131],"develop":[132],"an":[133],"approach":[134,194],"to":[135,176,187,198,215,235],"explore":[136],"sentiment":[137,168,232],"potential":[141,239],"indicator":[142],"concept":[147],"We":[149,172,190,223],"evaluate":[150,179,216],"its":[151],"on":[153,243],"pairs":[154],"classes":[157],"from":[158],"MESH":[159],"Human":[161],"Disease":[162],"Ontology":[163],"(DO),":[164],"comparing":[165],"contrasting":[167],"scores":[169],"between":[170],"examples":[175],"identify":[177],"number":[181],"outlying":[183,203],"examples,":[184],"relating":[185],"them":[186],"existing":[188],"literature.":[189],"discuss":[191,225],"how":[192],"our":[193,250],"could":[195,212],"used":[197,214],"guide":[199],"developers":[201],"potentially":[205],"biased":[206],"language,":[207],"forming":[208],"tool":[210],"improve":[218],"normalisation":[219],"also":[224],"applicability":[227],"appropriateness":[229],"general-purpose":[231],"applied":[234],"texts,":[237],"influences":[240],"computational":[244],"analysis,":[245],"context":[248],"results.":[251]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
