{"id":"https://openalex.org/W4205771048","doi":"https://doi.org/10.1109/bibm52615.2021.9669311","title":"Understanding and Reasoning About Early Signs of Sepsis: From Annotation Guideline to Ontology","display_name":"Understanding and Reasoning About Early Signs of Sepsis: From Annotation Guideline to Ontology","publication_year":2021,"publication_date":"2021-12-09","ids":{"openalex":"https://openalex.org/W4205771048","doi":"https://doi.org/10.1109/bibm52615.2021.9669311"},"language":"en","primary_location":{"id":"doi:10.1109/bibm52615.2021.9669311","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669311","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hdl.handle.net/11250/2977187","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044150479","display_name":"Melissa Y. Yan","orcid":"https://orcid.org/0000-0002-8079-7923"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Melissa Y. Yan","raw_affiliation_strings":["Dept. of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058109134","display_name":"Lise Husby H\u00f8vik","orcid":"https://orcid.org/0000-0001-6380-029X"},"institutions":[{"id":"https://openalex.org/I4210104358","display_name":"St Olav's University Hospital","ror":"https://ror.org/01a4hbq44","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I4210104358"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Lise Husby Hovik","raw_affiliation_strings":["Clinic of Anaesthesia and Intensive Care St. Olavs hospital, Trondheim University Hospital, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Clinic of Anaesthesia and Intensive Care St. Olavs hospital, Trondheim University Hospital, Trondheim, Norway","institution_ids":["https://openalex.org/I4210104358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006178262","display_name":"Lise Tuset Gustad","orcid":"https://orcid.org/0000-0003-2709-3991"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Lise Tuset Gustad","raw_affiliation_strings":["Dept. of Circulation and Medical Imaging, Norwegian University of Science and Technology, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Circulation and Medical Imaging, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022242950","display_name":"\u00d8ystein Nytr\u00f8","orcid":"https://orcid.org/0000-0002-8163-2362"},"institutions":[{"id":"https://openalex.org/I204778367","display_name":"Norwegian University of Science and Technology","ror":"https://ror.org/05xg72x27","country_code":"NO","type":"education","lineage":["https://openalex.org/I204778367"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Oystein Nytro","raw_affiliation_strings":["Dept. of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, Norwegian University of Science and Technology, Trondheim, Norway","institution_ids":["https://openalex.org/I204778367"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.2006,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.85891601,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"18","issue":null,"first_page":"1906","last_page":"1911"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10218","display_name":"Sepsis Diagnosis and Treatment","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10218","display_name":"Sepsis Diagnosis and Treatment","score":0.9908000230789185,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.9721999764442444,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12574","display_name":"Clinical Reasoning and Diagnostic Skills","score":0.9585000276565552,"subfield":{"id":"https://openalex.org/subfields/2714","display_name":"Family Practice"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/guideline","display_name":"Guideline","score":0.732803463935852},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7140687108039856},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6048316359519958},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.5786169767379761},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5076864957809448},{"id":"https://openalex.org/keywords/health-records","display_name":"Health records","score":0.4887666404247284},{"id":"https://openalex.org/keywords/harm","display_name":"Harm","score":0.4568330943584442},{"id":"https://openalex.org/keywords/clinical-decision-support-system","display_name":"Clinical decision support system","score":0.45309948921203613},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4377366602420807},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.41907623410224915},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3444131016731262},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.34015417098999023},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3212549388408661},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.26517170667648315},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.21886709332466125},{"id":"https://openalex.org/keywords/decision-support-system","display_name":"Decision support system","score":0.16508668661117554},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.08797532320022583}],"concepts":[{"id":"https://openalex.org/C2780182762","wikidata":"https://www.wikidata.org/wiki/Q1630279","display_name":"Guideline","level":2,"score":0.732803463935852},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7140687108039856},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6048316359519958},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5786169767379761},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5076864957809448},{"id":"https://openalex.org/C3019952477","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Health records","level":3,"score":0.4887666404247284},{"id":"https://openalex.org/C2777363581","wikidata":"https://www.wikidata.org/wiki/Q15098235","display_name":"Harm","level":2,"score":0.4568330943584442},{"id":"https://openalex.org/C63527458","wikidata":"https://www.wikidata.org/wiki/Q5133829","display_name":"Clinical decision support system","level":3,"score":0.45309948921203613},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4377366602420807},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.41907623410224915},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3444131016731262},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.34015417098999023},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3212549388408661},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.26517170667648315},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.21886709332466125},{"id":"https://openalex.org/C107327155","wikidata":"https://www.wikidata.org/wiki/Q330268","display_name":"Decision support system","level":2,"score":0.16508668661117554},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.08797532320022583},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm52615.2021.9669311","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm52615.2021.9669311","pdf_url":null,"source":{"id":"https://openalex.org/S4363607735","display_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:ntnuopen.ntnu.no:11250/2977187","is_oa":true,"landing_page_url":"https://hdl.handle.net/11250/2977187","pdf_url":null,"source":{"id":"https://openalex.org/S4306401716","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"info:eu-repo/semantics/bookPart"}],"best_oa_location":{"id":"pmh:oai:ntnuopen.ntnu.no:11250/2977187","is_oa":true,"landing_page_url":"https://hdl.handle.net/11250/2977187","pdf_url":null,"source":{"id":"https://openalex.org/S4306401716","display_name":"Duo Research Archive (University of Oslo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I184942183","host_organization_name":"University of Oslo","host_organization_lineage":["https://openalex.org/I184942183"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2021 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"info:eu-repo/semantics/bookPart"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320338440","display_name":"HORIZON EUROPE Health","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W8550301","https://openalex.org/W1550590706","https://openalex.org/W1593666529","https://openalex.org/W1861620696","https://openalex.org/W1912501061","https://openalex.org/W2023806451","https://openalex.org/W2039251546","https://openalex.org/W2046492349","https://openalex.org/W2048351815","https://openalex.org/W2084095073","https://openalex.org/W2088875727","https://openalex.org/W2092509739","https://openalex.org/W2118686428","https://openalex.org/W2141201603","https://openalex.org/W2163670493","https://openalex.org/W2168041406","https://openalex.org/W2261812172","https://openalex.org/W2280404143","https://openalex.org/W2468221466","https://openalex.org/W2604972438","https://openalex.org/W2742218798","https://openalex.org/W2742607849","https://openalex.org/W2755626276","https://openalex.org/W2786912752","https://openalex.org/W2806490016","https://openalex.org/W2962970817","https://openalex.org/W2971885957","https://openalex.org/W3029731626","https://openalex.org/W6600347082","https://openalex.org/W6606775605","https://openalex.org/W6677551660"],"related_works":["https://openalex.org/W2339422290","https://openalex.org/W4255371791","https://openalex.org/W4233871529","https://openalex.org/W2397653702","https://openalex.org/W2338818750","https://openalex.org/W2365451219","https://openalex.org/W2415869793","https://openalex.org/W4211072166","https://openalex.org/W1525073044","https://openalex.org/W2122931948"],"abstract_inverted_index":{"In":[0],"the":[1,99],"clinical":[2,37,103,106,111],"domain,":[3],"patient":[4,48,101],"states":[5],"such":[6],"as":[7],"sepsis":[8],"due":[9],"to":[10,21,46,92],"bloodstream":[11],"infection":[12],"(BSI)":[13],"result":[14],"in":[15,32],"observable":[16],"symptoms":[17],"and":[18,24,41,53,69,85,105,108,117],"signs":[19],"used":[20],"determine":[22],"diagnosis":[23],"treatment,":[25],"all":[26],"of":[27],"which":[28],"often":[29],"is":[30,39],"documented":[31],"electronic":[33],"health":[34],"records.":[35],"However,":[36],"text":[38],"brief":[40],"implicit,":[42],"making":[43],"it":[44],"challenging":[45],"infer":[47],"conditions":[49],"by":[50],"reasoning":[51],"tasks":[52],"supervised":[54],"machine":[55,118],"learning.":[56,119],"To":[57],"study":[58],"sepsis-related":[59],"BSIs,":[60],"we":[61],"developed":[62],"an":[63,66],"ontology":[64,96],"from":[65,76],"annotation":[67],"guideline":[68,83],"annotated":[70],"corpus":[71],"that":[72,88],"empirically":[73],"captures":[74],"BSIs":[75],"adverse":[77],"event":[78],"notes":[79],"containing":[80],"procedural":[81],"deviations,":[82,84],"unwanted":[86],"incidents":[87],"can":[89],"bring":[90],"harm":[91],"patients.":[93],"The":[94],"resulting":[95],"represents":[97],"(1)":[98],"physical":[100],"state,":[102],"observations,":[104],"documentation,":[107],"(2)":[109],"background":[110],"knowledge":[112],"for":[113],"artificial":[114],"intelligence,":[115],"reasoning,":[116]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
