{"id":"https://openalex.org/W3126771798","doi":"https://doi.org/10.1109/bibm49941.2020.9313592","title":"Virus Named Entity Recognition based on Pre-training Model","display_name":"Virus Named Entity Recognition based on Pre-training Model","publication_year":2020,"publication_date":"2020-12-16","ids":{"openalex":"https://openalex.org/W3126771798","doi":"https://doi.org/10.1109/bibm49941.2020.9313592","mag":"3126771798"},"language":"en","primary_location":{"id":"doi:10.1109/bibm49941.2020.9313592","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm49941.2020.9313592","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038394713","display_name":"Hanlin Mou","orcid":"https://orcid.org/0000-0003-4463-2432"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hanlin Mou","raw_affiliation_strings":["Hubei Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, China","School of Computer, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102200785","display_name":"Shanshan Zheng","orcid":null},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shanshan Zheng","raw_affiliation_strings":["Hubei Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, China","School of Computer, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001582879","display_name":"Haifang Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haifang Wu","raw_affiliation_strings":["Hubei Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, China","School of Computer, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019913931","display_name":"Bojing Li","orcid":"https://orcid.org/0000-0003-1330-7565"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bojing Li","raw_affiliation_strings":["Hubei Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, China","School of Computer, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039602194","display_name":"Tingting He","orcid":"https://orcid.org/0000-0002-5677-2718"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingting He","raw_affiliation_strings":["Hubei Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, China","School of Computer, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003550654","display_name":"Xingpeng Jiang","orcid":"https://orcid.org/0000-0002-8848-9300"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingpeng Jiang","raw_affiliation_strings":["Hubei Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, China","School of Computer, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Key Laboratory of Artificial Intelligence and Smart Learning, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1354,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.59410288,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"473","last_page":"476"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9696999788284302,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/host","display_name":"Host (biology)","score":0.6540348529815674},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6496691107749939},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.5803817510604858},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5791603326797485},{"id":"https://openalex.org/keywords/virus-classification","display_name":"Virus classification","score":0.5140203237533569},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.4986135959625244},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4722059369087219},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4543229937553406},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4145162105560303},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2613423466682434},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.1869036853313446},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.15016812086105347},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.118764728307724},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.08397448062896729},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07161018252372742},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.0680328905582428}],"concepts":[{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.6540348529815674},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6496691107749939},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.5803817510604858},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5791603326797485},{"id":"https://openalex.org/C20850961","wikidata":"https://www.wikidata.org/wiki/Q478216","display_name":"Virus classification","level":4,"score":0.5140203237533569},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.4986135959625244},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4722059369087219},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4543229937553406},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4145162105560303},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2613423466682434},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.1869036853313446},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.15016812086105347},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.118764728307724},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.08397448062896729},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07161018252372742},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0680328905582428},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm49941.2020.9313592","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm49941.2020.9313592","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6000000238418579,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W165283731","https://openalex.org/W1504453842","https://openalex.org/W2016043834","https://openalex.org/W2095705004","https://openalex.org/W2147880316","https://openalex.org/W2163107094","https://openalex.org/W2616941696","https://openalex.org/W2734399491","https://openalex.org/W2763547223","https://openalex.org/W2785001576","https://openalex.org/W2786724030","https://openalex.org/W2787560479","https://openalex.org/W2800535933","https://openalex.org/W2891893703","https://openalex.org/W2911489562","https://openalex.org/W2913332478","https://openalex.org/W2950577311","https://openalex.org/W2951679282","https://openalex.org/W2963341956","https://openalex.org/W2964121744","https://openalex.org/W2964242047","https://openalex.org/W3017779111","https://openalex.org/W3019170348"],"related_works":["https://openalex.org/W3199871245","https://openalex.org/W2915436880","https://openalex.org/W1964783010","https://openalex.org/W3198729192","https://openalex.org/W3121292129","https://openalex.org/W4295038225","https://openalex.org/W4285819037","https://openalex.org/W2800535933","https://openalex.org/W3123942215","https://openalex.org/W4386217524"],"abstract_inverted_index":{"Virus":[0,83],"plays":[1],"an":[2],"important":[3],"role":[4],"in":[5,53,63],"the":[6,11,14,25,28,35,54,57,89,104,120,148],"earth's":[7],"ecosystem.":[8,15],"It":[9,16],"maintains":[10],"balance":[12],"of":[13,46,75,93,98,106,122,150],"infects":[17],"host":[18,33],"cells,":[19],"causing":[20],"damage":[21],"or":[22],"death":[23],"to":[24,37,78,130],"host.":[26],"Understanding":[27],"relationship":[29,94],"between":[30,49,59],"virus":[31,99,107,136],"and":[32,51,61,66,80,101,157,163],"is":[34,74,88],"key":[36,90],"preventing":[38],"viral":[39],"diseases.":[40],"There":[41],"are":[42,160],"a":[43,70,116],"large":[44],"number":[45],"proven":[47],"relationships":[48,58],"viruses":[50,60],"hosts":[52,62],"literature.":[55],"Extracting":[56],"these":[64],"literature":[65],"organizing":[67],"them":[68],"into":[69],"virus-host":[71],"knowledge":[72],"base":[73],"great":[76],"significance":[77],"medical":[79],"biological":[81],"research.":[82],"named":[84,108],"entity":[85,137],"recognition":[86,138],"(VNER)":[87],"prerequisite":[91],"step":[92],"extraction.":[95],"The":[96,152],"complexity":[97],"naming":[100],"classification":[102],"makes":[103],"identification":[105],"entities":[109],"challenging.":[110],"In":[111],"this":[112],"paper,":[113],"we":[114,125],"provide":[115],"labeled":[117],"corpus":[118],"for":[119],"task":[121,149],"VNER.":[123,151],"Furthermore,":[124],"use":[126],"different":[127],"pre-training":[128],"models":[129],"compare":[131],"its":[132],"performance":[133],"on":[134,147],"downstream":[135],"tasks.":[139],"Finally,":[140],"BioBERT_":[141],"BiLSTM_":[142],"CRF":[143],"got":[144],"best":[145],"result":[146],"precision":[153],"value,":[154],"recall":[155],"value":[156,159],"F1":[158],"92.18%,":[161],"91.28%":[162],"91.85%,":[164],"respectively.":[165]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
