{"id":"https://openalex.org/W3127440888","doi":"https://doi.org/10.1109/bibm49941.2020.9313435","title":"Generating Training Data for Concept-Mining for an \u2018Interface Terminology\u2019 Annotating Cardiology EHRs","display_name":"Generating Training Data for Concept-Mining for an \u2018Interface Terminology\u2019 Annotating Cardiology EHRs","publication_year":2020,"publication_date":"2020-12-16","ids":{"openalex":"https://openalex.org/W3127440888","doi":"https://doi.org/10.1109/bibm49941.2020.9313435","mag":"3127440888"},"language":"en","primary_location":{"id":"doi:10.1109/bibm49941.2020.9313435","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm49941.2020.9313435","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080240865","display_name":"Vipina K. Keloth","orcid":"https://orcid.org/0000-0001-6919-1122"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vipina K. Keloth","raw_affiliation_strings":["NJIT, Newark, NJ USA"],"affiliations":[{"raw_affiliation_string":"NJIT, Newark, NJ USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033069494","display_name":"Shuxin Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shuxin Zhou","raw_affiliation_strings":["NJIT, Newark, NJ USA"],"affiliations":[{"raw_affiliation_string":"NJIT, Newark, NJ USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042867497","display_name":"Andrew J. Einstein","orcid":"https://orcid.org/0000-0003-2583-9278"},"institutions":[{"id":"https://openalex.org/I2799503643","display_name":"Columbia University Irving Medical Center","ror":"https://ror.org/01esghr10","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799503643"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew J. Einstein","raw_affiliation_strings":["Cardiology Division, Columbia University Irving, Medical Center, New York, NY USA"],"affiliations":[{"raw_affiliation_string":"Cardiology Division, Columbia University Irving, Medical Center, New York, NY USA","institution_ids":["https://openalex.org/I2799503643"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049544815","display_name":"Gai Elhanan","orcid":"https://orcid.org/0000-0003-1518-5522"},"institutions":[{"id":"https://openalex.org/I60138030","display_name":"Desert Research Institute","ror":"https://ror.org/02vg22c33","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I60138030"]},{"id":"https://openalex.org/I2802417501","display_name":"Renown Health","ror":"https://ror.org/00w205b62","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2802417501"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gai Elhanan","raw_affiliation_strings":["Renown Institute for Health Innovation Desert Research Institute, Reno, NV USA"],"affiliations":[{"raw_affiliation_string":"Renown Institute for Health Innovation Desert Research Institute, Reno, NV USA","institution_ids":["https://openalex.org/I2802417501","https://openalex.org/I60138030"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100378144","display_name":"Yan Chen","orcid":"https://orcid.org/0000-0003-1270-3400"},"institutions":[{"id":"https://openalex.org/I15653065","display_name":"Borough of Manhattan Community College","ror":"https://ror.org/040hwr020","country_code":"US","type":"education","lineage":["https://openalex.org/I15653065"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yan Chen","raw_affiliation_strings":["BMCC, CUNY, New York, NY USA"],"affiliations":[{"raw_affiliation_string":"BMCC, CUNY, New York, NY USA","institution_ids":["https://openalex.org/I15653065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070654032","display_name":"James Geller","orcid":"https://orcid.org/0000-0002-9120-525X"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Geller","raw_affiliation_strings":["NJIT, Newark, NJ USA"],"affiliations":[{"raw_affiliation_string":"NJIT, Newark, NJ USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077648725","display_name":"Yehoshua Perl","orcid":"https://orcid.org/0000-0003-1940-9386"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yehoshua Perl","raw_affiliation_strings":["NJIT, Newark, NJ USA"],"affiliations":[{"raw_affiliation_string":"NJIT, Newark, NJ USA","institution_ids":["https://openalex.org/I118118575"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5080240865"],"corresponding_institution_ids":["https://openalex.org/I118118575"],"apc_list":null,"apc_paid":null,"fwci":0.0829,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.46344476,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1728","last_page":"1735"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9840999841690063,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.8563122749328613},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.8199690580368042},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7457592487335205},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6498106122016907},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.6436716914176941},{"id":"https://openalex.org/keywords/concatenation","display_name":"Concatenation (mathematics)","score":0.5067046284675598},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.39728718996047974},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33749520778656006},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.329958438873291}],"concepts":[{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.8563122749328613},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.8199690580368042},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7457592487335205},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6498106122016907},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.6436716914176941},{"id":"https://openalex.org/C87619178","wikidata":"https://www.wikidata.org/wiki/Q126002","display_name":"Concatenation (mathematics)","level":2,"score":0.5067046284675598},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.39728718996047974},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33749520778656006},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.329958438873291},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm49941.2020.9313435","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm49941.2020.9313435","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.5199999809265137}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W6693342","https://openalex.org/W7126071","https://openalex.org/W102787101","https://openalex.org/W192539577","https://openalex.org/W266686749","https://openalex.org/W1984314602","https://openalex.org/W2006642610","https://openalex.org/W2028993630","https://openalex.org/W2067819940","https://openalex.org/W2102626131","https://openalex.org/W2122402213","https://openalex.org/W2146089916","https://openalex.org/W2159583324","https://openalex.org/W2168041406","https://openalex.org/W2261812172","https://openalex.org/W2396881363","https://openalex.org/W2404369708","https://openalex.org/W2582146834","https://openalex.org/W2768488789","https://openalex.org/W2769851464","https://openalex.org/W2891469329","https://openalex.org/W2908300865","https://openalex.org/W2941310691","https://openalex.org/W2986797623"],"related_works":["https://openalex.org/W2039735462","https://openalex.org/W2951665393","https://openalex.org/W4297803142","https://openalex.org/W2770499767","https://openalex.org/W2295806952","https://openalex.org/W2293521960","https://openalex.org/W172101468","https://openalex.org/W2405923535","https://openalex.org/W1511848092","https://openalex.org/W1708042184"],"abstract_inverted_index":{"Clinical":[0],"data":[1],"stored":[2],"in":[3,55],"EHRs":[4],"could":[5],"provide":[6],"valuable":[7],"knowledge":[8],"for":[9,92],"research":[10],"if":[11],"it":[12],"were":[13],"annotated":[14,23],"properly.":[15],"However,":[16],"almost":[17],"no":[18],"EHR":[19,53,73,108],"notes":[20,54],"are":[21],"currently":[22],"as":[24],"the":[25,29,37,50,64],"performance":[26],"of":[27,52,66,107],"off":[28],"shelf":[30],"annotation":[31,51],"tools":[32,88],"is":[33],"unsatisfactory.":[34],"Concentrating":[35],"on":[36],"cardiology":[38,72,82],"specialty,":[39],"we":[40,104],"propose":[41],"to":[42,49,75,116,126],"design":[43],"a":[44],"Cardiology":[45],"Interface":[46],"Terminology":[47],"dedicated":[48],"cardiology.":[56],"This":[57,121],"interface":[58,95],"terminology":[59,96],"will":[60],"be":[61,124],"developed":[62],"by":[63],"addition":[65],"high":[67],"granularity":[68],"concepts,":[69],"mined":[70],"from":[71],"notes,":[74,109],"an":[76],"initial":[77],"version":[78],"reusing":[79],"SNOMED":[80],"CT":[81],"subhierarchies.":[83],"Using":[84],"text":[85],"mining":[86],"NLP":[87],"with":[89],"machine":[90],"learning":[91],"extending":[93],"this":[94,102],"requires":[97],"proper":[98],"training":[99,119],"data.":[100,120],"In":[101],"paper,":[103],"discuss":[105],"concept-mining":[106],"using":[110],"concatenation":[111],"and":[112],"anchoring":[113],"operations":[114],"iteratively":[115],"create":[117],"such":[118],"approach":[122],"can":[123],"applied":[125],"other":[127],"medical":[128],"specialties.":[129]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
