{"id":"https://openalex.org/W3128753849","doi":"https://doi.org/10.1109/bibm49941.2020.9313312","title":"Verify: a toolbox for deterministic verification of computational models","display_name":"Verify: a toolbox for deterministic verification of computational models","publication_year":2020,"publication_date":"2020-12-16","ids":{"openalex":"https://openalex.org/W3128753849","doi":"https://doi.org/10.1109/bibm49941.2020.9313312","mag":"3128753849"},"language":"en","primary_location":{"id":"doi:10.1109/bibm49941.2020.9313312","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm49941.2020.9313312","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025331591","display_name":"Giuseppe Alessandro Parasiliti Palumbo","orcid":"https://orcid.org/0000-0003-4646-9851"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppe Alessandro Parasiliti Palumbo","raw_affiliation_strings":["University of Catania, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004880055","display_name":"Giulia Russo","orcid":"https://orcid.org/0000-0001-6616-7856"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giulia Russo","raw_affiliation_strings":["University of Catania, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078384674","display_name":"Giuseppe Sgroi","orcid":"https://orcid.org/0000-0001-5062-4696"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppe Sgroi","raw_affiliation_strings":["University of Catania, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086585880","display_name":"Marco Viceconti","orcid":"https://orcid.org/0000-0002-2293-1530"},"institutions":[{"id":"https://openalex.org/I4210121742","display_name":"Istituto Ortopedico Rizzoli","ror":"https://ror.org/02ycyys66","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210121742","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Viceconti","raw_affiliation_strings":["Alma Mater Studiorum University of Bologna, and Medical Technology Lab, IRCCS Istituto Ortopedico Rizzoli, Bologna, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Alma Mater Studiorum University of Bologna, and Medical Technology Lab, IRCCS Istituto Ortopedico Rizzoli, Bologna, Italy","institution_ids":["https://openalex.org/I4210121742","https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003874484","display_name":"Marzio Pennisi","orcid":"https://orcid.org/0000-0003-0231-7653"},"institutions":[{"id":"https://openalex.org/I123338534","display_name":"Universit\u00e0 degli Studi del Piemonte Orientale \u201cAmedeo Avogadro\u201d","ror":"https://ror.org/04387x656","country_code":"IT","type":"education","lineage":["https://openalex.org/I123338534"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marzio Pennisi","raw_affiliation_strings":["Computer Science Institute, DiSIT University of Eastern Piedmont, Alessandria, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Institute, DiSIT University of Eastern Piedmont, Alessandria, Italy","institution_ids":["https://openalex.org/I123338534"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032192084","display_name":"Cristina Curreli","orcid":"https://orcid.org/0000-0002-9904-3849"},"institutions":[{"id":"https://openalex.org/I4210121742","display_name":"Istituto Ortopedico Rizzoli","ror":"https://ror.org/02ycyys66","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210121742","https://openalex.org/I4210153126"]},{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Cristina Curreli","raw_affiliation_strings":["Alma Mater Studiorum University of Bologna, and Medical Technology Lab, IRCCS Istituto Ortopedico Rizzoli, Bologna, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Alma Mater Studiorum University of Bologna, and Medical Technology Lab, IRCCS Istituto Ortopedico Rizzoli, Bologna, Italy","institution_ids":["https://openalex.org/I4210121742","https://openalex.org/I9360294"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044340074","display_name":"Francesco Pappalardo","orcid":"https://orcid.org/0000-0003-1668-3320"},"institutions":[{"id":"https://openalex.org/I123338534","display_name":"Universit\u00e0 degli Studi del Piemonte Orientale \u201cAmedeo Avogadro\u201d","ror":"https://ror.org/04387x656","country_code":"IT","type":"education","lineage":["https://openalex.org/I123338534"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesco Pappalardo","raw_affiliation_strings":["Computer Science Institute, DiSIT University of Eastern Piedmont, Alessandria, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Institute, DiSIT University of Eastern Piedmont, Alessandria, Italy","institution_ids":["https://openalex.org/I123338534"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.4692,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.84707288,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1262","last_page":"1267"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10928","display_name":"Probabilistic and Robust Engineering Design","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10848","display_name":"Advanced Multi-Objective Optimization Algorithms","score":0.9690999984741211,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.9622352123260498},{"id":"https://openalex.org/keywords/rotation-formalisms-in-three-dimensions","display_name":"Rotation formalisms in three dimensions","score":0.7720827460289001},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7538397312164307},{"id":"https://openalex.org/keywords/credibility","display_name":"Credibility","score":0.7418464422225952},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.5028621554374695},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.5016076564788818},{"id":"https://openalex.org/keywords/formal-verification","display_name":"Formal verification","score":0.4458412528038025},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2782173752784729},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2379191815853119},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07296997308731079}],"concepts":[{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.9622352123260498},{"id":"https://openalex.org/C171018156","wikidata":"https://www.wikidata.org/wiki/Q7370306","display_name":"Rotation formalisms in three dimensions","level":2,"score":0.7720827460289001},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7538397312164307},{"id":"https://openalex.org/C2780224610","wikidata":"https://www.wikidata.org/wiki/Q1530061","display_name":"Credibility","level":2,"score":0.7418464422225952},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.5028621554374695},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.5016076564788818},{"id":"https://openalex.org/C111498074","wikidata":"https://www.wikidata.org/wiki/Q173326","display_name":"Formal verification","level":2,"score":0.4458412528038025},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2782173752784729},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2379191815853119},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07296997308731079},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm49941.2020.9313312","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm49941.2020.9313312","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4399999976158142}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1771999207","https://openalex.org/W1965031944","https://openalex.org/W2029767409","https://openalex.org/W2047603234","https://openalex.org/W2066424162","https://openalex.org/W2088765131","https://openalex.org/W2090448257","https://openalex.org/W2101589741","https://openalex.org/W2102439908","https://openalex.org/W2152803686","https://openalex.org/W2569457803","https://openalex.org/W2779931721","https://openalex.org/W2903072518","https://openalex.org/W2914061030"],"related_works":["https://openalex.org/W57206970","https://openalex.org/W4205140848","https://openalex.org/W2068663075","https://openalex.org/W2388687352","https://openalex.org/W4235091896","https://openalex.org/W2978678743","https://openalex.org/W2185981755","https://openalex.org/W2023896637","https://openalex.org/W2498253392","https://openalex.org/W2996527951"],"abstract_inverted_index":{"The":[0,98],"application":[1],"of":[2,57,81,89,109],"Agent":[3],"Based":[4],"Models":[5],"(ABMs)":[6],"in":[7,46],"biology":[8],"and":[9,28,52,62,84,113,120],"immunology":[10],"has":[11,100],"recently":[12],"come":[13],"to":[14,18,21,33,50],"the":[15,31,55,78,87,107],"fore,":[16],"thanks":[17],"their":[19],"ability":[20],"accurately":[22],"describe":[23],"complex":[24,35],"biological":[25],"behaviors,":[26],"rules,":[27],"interactions,":[29],"without":[30],"need":[32],"use":[34],"mathematical":[36],"formalisms.":[37],"However,":[38],"even":[39],"if":[40],"there":[41],"is":[42],"a":[43,93,101],"growing":[44],"interest":[45],"applying":[47],"such":[48,125],"methodologies":[49],"improve":[51],"speed":[53],"up":[54],"research":[56],"novel":[58],"pharmaceutical":[59],"products,":[60],"verification":[61,88],"validation":[63],"procedures":[64],"voted":[65],"at":[66],"assessing":[67],"ABMs":[68],"credibility":[69],"are":[70],"far":[71],"from":[72],"being":[73],"well-established.":[74],"We":[75],"present":[76],"Verify,":[77],"first":[79],"toolbox":[80,99],"instruments":[82],"selected":[83],"designed":[85],"for":[86],"discrete-time":[90],"models,":[91],"with":[92],"focus":[94],"on":[95],"agent-based":[96],"approaches.":[97],"friendly":[102],"GUI,":[103],"does":[104],"not":[105],"require":[106],"installation":[108],"any":[110],"additional":[111],"software,":[112],"can":[114],"easily":[115],"find":[116],"possible":[117],"numerical":[118],"errors":[119],"incongruences":[121],"that":[122],"may":[123],"affect":[124],"models.":[126]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
