{"id":"https://openalex.org/W3127443464","doi":"https://doi.org/10.1109/bibm49941.2020.9313290","title":"An End-to-end Oxford Nanopore Basecaller Using Convolution-augmented Transformer","display_name":"An End-to-end Oxford Nanopore Basecaller Using Convolution-augmented Transformer","publication_year":2020,"publication_date":"2020-12-16","ids":{"openalex":"https://openalex.org/W3127443464","doi":"https://doi.org/10.1109/bibm49941.2020.9313290","mag":"3127443464"},"language":"en","primary_location":{"id":"doi:10.1109/bibm49941.2020.9313290","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm49941.2020.9313290","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/10072/404392","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067129052","display_name":"Xuan Lv","orcid":"https://orcid.org/0000-0001-8821-0026"},"institutions":[{"id":"https://openalex.org/I170215575","display_name":"National University of Defense Technology","ror":"https://ror.org/05d2yfz11","country_code":"CN","type":"education","lineage":["https://openalex.org/I170215575"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xuan Lv","raw_affiliation_strings":["School of Computer Science, National University of Defense Technology, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, National University of Defense Technology, Changsha, China","institution_ids":["https://openalex.org/I170215575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101483479","display_name":"Zhiguang Chen","orcid":"https://orcid.org/0000-0002-9318-5715"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiguang Chen","raw_affiliation_strings":["School of Data and Computer Science, Sun Yat-sen University, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Data and Computer Science, Sun Yat-sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101633465","display_name":"Yutong Lu","orcid":"https://orcid.org/0000-0001-5315-3375"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yutong Lu","raw_affiliation_strings":["School of Data and Computer Science, Sun Yat-sen University, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Data and Computer Science, Sun Yat-sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023539493","display_name":"Yuedong Yang","orcid":"https://orcid.org/0000-0002-6782-2813"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuedong Yang","raw_affiliation_strings":["School of Data and Computer Science, Sun Yat-sen University, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"School of Data and Computer Science, Sun Yat-sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5067129052"],"corresponding_institution_ids":["https://openalex.org/I170215575"],"apc_list":null,"apc_paid":null,"fwci":0.7806,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.6945056,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"337","last_page":"342"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11582","display_name":"Nanopore and Nanochannel Transport Studies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11255","display_name":"Microfluidic and Bio-sensing Technologies","score":0.9438999891281128,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10412","display_name":"Microfluidic and Capillary Electrophoresis Applications","score":0.9359999895095825,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5563136339187622},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.5330905318260193},{"id":"https://openalex.org/keywords/end-to-end-principle","display_name":"End-to-end principle","score":0.48191598057746887},{"id":"https://openalex.org/keywords/nanopore","display_name":"Nanopore","score":0.4749322533607483},{"id":"https://openalex.org/keywords/convolution","display_name":"Convolution (computer science)","score":0.47102054953575134},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.3470129072666168},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.2170032262802124},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.19489163160324097},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17264077067375183},{"id":"https://openalex.org/keywords/voltage","display_name":"Voltage","score":0.1483578085899353},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.07695445418357849}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5563136339187622},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.5330905318260193},{"id":"https://openalex.org/C74296488","wikidata":"https://www.wikidata.org/wiki/Q2527392","display_name":"End-to-end principle","level":2,"score":0.48191598057746887},{"id":"https://openalex.org/C141795571","wikidata":"https://www.wikidata.org/wiki/Q580942","display_name":"Nanopore","level":2,"score":0.4749322533607483},{"id":"https://openalex.org/C45347329","wikidata":"https://www.wikidata.org/wiki/Q5166604","display_name":"Convolution (computer science)","level":3,"score":0.47102054953575134},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.3470129072666168},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.2170032262802124},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.19489163160324097},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17264077067375183},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.1483578085899353},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.07695445418357849},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm49941.2020.9313290","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm49941.2020.9313290","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/404392","is_oa":true,"landing_page_url":"http://hdl.handle.net/10072/404392","pdf_url":"http://hdl.handle.net/10072/404392","source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference output"}],"best_oa_location":{"id":"pmh:oai:research-repository.griffith.edu.au:10072/404392","is_oa":true,"landing_page_url":"http://hdl.handle.net/10072/404392","pdf_url":"http://hdl.handle.net/10072/404392","source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference output"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1477544716","display_name":null,"funder_award_id":"Guangdong","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1619931070","display_name":null,"funder_award_id":"U1611261","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2602136225","display_name":null,"funder_award_id":"2018B01","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3787295669","display_name":null,"funder_award_id":"8180113","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G391238517","display_name":null,"funder_award_id":", and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4285831925","display_name":null,"funder_award_id":"81801132","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5108781970","display_name":null,"funder_award_id":"61772566","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6069953956","display_name":null,"funder_award_id":"2018B0101","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6346021793","display_name":null,"funder_award_id":"2019B020228001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8208342437","display_name":null,"funder_award_id":"1 and","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321514","display_name":"Central South University","ror":"https://ror.org/00f1zfq44"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3127443464.pdf","grobid_xml":"https://content.openalex.org/works/W3127443464.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W1519765314","https://openalex.org/W1522301498","https://openalex.org/W1665214252","https://openalex.org/W2127141656","https://openalex.org/W2317495605","https://openalex.org/W2490087886","https://openalex.org/W2514454343","https://openalex.org/W2582252439","https://openalex.org/W2591367881","https://openalex.org/W2607669908","https://openalex.org/W2611549381","https://openalex.org/W2613904329","https://openalex.org/W2789843538","https://openalex.org/W2905047333","https://openalex.org/W2908336025","https://openalex.org/W2942123291","https://openalex.org/W2948863695","https://openalex.org/W2949279762","https://openalex.org/W2950993016","https://openalex.org/W2952809536","https://openalex.org/W2953333557","https://openalex.org/W2964121744","https://openalex.org/W2964265128","https://openalex.org/W2970120757","https://openalex.org/W2972324944","https://openalex.org/W2994678679","https://openalex.org/W3004686118","https://openalex.org/W3005769002","https://openalex.org/W3005883253","https://openalex.org/W3006683367","https://openalex.org/W3007309629","https://openalex.org/W3012929814","https://openalex.org/W3021186977","https://openalex.org/W3034516664","https://openalex.org/W3048805029","https://openalex.org/W4288365550","https://openalex.org/W4385245566","https://openalex.org/W6631190155","https://openalex.org/W6637242042","https://openalex.org/W6737462116","https://openalex.org/W6737778391","https://openalex.org/W6756798234","https://openalex.org/W6757585730","https://openalex.org/W6765069029","https://openalex.org/W6774054309"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2055215578","https://openalex.org/W3097090396","https://openalex.org/W2734703372","https://openalex.org/W2267068863","https://openalex.org/W1989500433","https://openalex.org/W2924313437","https://openalex.org/W2328692626","https://openalex.org/W3141442004","https://openalex.org/W2864363823"],"abstract_inverted_index":{"The":[0],"following":[1],"topics":[2],"are":[3],"dealt":[4],"with:":[5],"learning":[6],"(artificial":[7],"intelligence);":[8],"diseases;":[9],"medical":[10,16],"image":[11],"processing;":[12],"molecular":[13],"biophysics;":[14],"genetics;":[15],"computing;":[17],"feature":[18],"extraction;":[19],"cancer;":[20],"genomics;":[21],"proteins.":[22]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}