{"id":"https://openalex.org/W3127786700","doi":"https://doi.org/10.1109/bibm49941.2020.9313283","title":"RNA binding proteins (RBPs) regulate lncRNA nuclear retention","display_name":"RNA binding proteins (RBPs) regulate lncRNA nuclear retention","publication_year":2020,"publication_date":"2020-12-16","ids":{"openalex":"https://openalex.org/W3127786700","doi":"https://doi.org/10.1109/bibm49941.2020.9313283","mag":"3127786700"},"language":"en","primary_location":{"id":"doi:10.1109/bibm49941.2020.9313283","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm49941.2020.9313283","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087923185","display_name":"Yile Huang","orcid":"https://orcid.org/0000-0001-7593-8085"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yile Huang","raw_affiliation_strings":["The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034263901","display_name":"Yulong Qiao","orcid":"https://orcid.org/0000-0002-1952-3077"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yulong Qiao","raw_affiliation_strings":["The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020847968","display_name":"Yu Zhao","orcid":"https://orcid.org/0000-0002-0349-7206"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yu Zhao","raw_affiliation_strings":["Li Ka Shing Institute of Health Sciences The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Li Ka Shing Institute of Health Sciences The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113008256","display_name":"Yingzhe Ding","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yingzhe Ding","raw_affiliation_strings":["The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101815894","display_name":"Jie Yuan","orcid":"https://orcid.org/0009-0005-4179-2619"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Jie Yuan","raw_affiliation_strings":["The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052221550","display_name":"Jiajian Zhou","orcid":"https://orcid.org/0000-0001-5206-0791"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Jiajian Zhou","raw_affiliation_strings":["Li Ka Shing Institute of Health Sciences The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Li Ka Shing Institute of Health Sciences The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056069573","display_name":"Huating Wang","orcid":"https://orcid.org/0000-0001-5474-2905"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Huating Wang","raw_affiliation_strings":["Li Ka Shing Institute of Health Sciences The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Li Ka Shing Institute of Health Sciences The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001836351","display_name":"Hao Sun","orcid":"https://orcid.org/0000-0002-5547-9501"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Hao Sun","raw_affiliation_strings":["Li Ka Shing Institute of Health Sciences The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Li Ka Shing Institute of Health Sciences The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]},{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin, New Territories, Hong Kong SAR, China","institution_ids":["https://openalex.org/I177725633"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I177725633"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"2918","last_page":"2919"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subcellular-localization","display_name":"Subcellular localization","score":0.5341298580169678},{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.527299165725708},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49557340145111084},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.47640979290008545},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.47285890579223633},{"id":"https://openalex.org/keywords/rna-binding-protein","display_name":"RNA-binding protein","score":0.4216915965080261},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23661082983016968},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.19131484627723694}],"concepts":[{"id":"https://openalex.org/C2776879804","wikidata":"https://www.wikidata.org/wiki/Q7630919","display_name":"Subcellular localization","level":3,"score":0.5341298580169678},{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.527299165725708},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49557340145111084},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.47640979290008545},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.47285890579223633},{"id":"https://openalex.org/C41282012","wikidata":"https://www.wikidata.org/wiki/Q3928341","display_name":"RNA-binding protein","level":4,"score":0.4216915965080261},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23661082983016968},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.19131484627723694}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm49941.2020.9313283","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm49941.2020.9313283","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W2505384565","https://openalex.org/W2785329615","https://openalex.org/W3046003662"],"related_works":["https://openalex.org/W4366238719","https://openalex.org/W2041440237","https://openalex.org/W2056125010","https://openalex.org/W3005984791","https://openalex.org/W2169777166","https://openalex.org/W2007507741","https://openalex.org/W4379233576","https://openalex.org/W2753172052","https://openalex.org/W3080365360","https://openalex.org/W1935063092"],"abstract_inverted_index":{"It":[0],"is":[1,28,57],"well":[2,173],"known":[3],"that":[4,55,63,130],"functional":[5],"modes":[6],"of":[7,23,46,82,118,196,199],"lncRNAs":[8,24,126,131],"are":[9,137],"intimately":[10],"associated":[11,111,135,159],"with":[12,160],"their":[13],"subcellular":[14,89,120],"localization":[15],"<sup":[16,32,49,85,92],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[17,33,50,86,93],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">1</sup>":[18],"and":[19,44,66,88,98,106,110,128,132,166,170,190],"relative":[20],"nuclear":[21,69,115,124,139,194],"enrichment":[22],"compared":[25],"to":[26,59,102,156,193],"mRNAs":[27],"a":[29,197],"prevalent":[30],"phenomenon":[31],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">2</sup>":[34],".":[35],"As":[36],"RBPs":[37,62,158],"control":[38],"the":[39,77,119,146,183],"production,":[40],"maturation,":[41],"localization,":[42],"translation,":[43],"degradation":[45],"cellular":[47],"RNAs":[48],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">3</sup>":[51],",":[52],"we":[53,74,150],"reason":[54],"it":[56],"important":[58],"uncover":[60],"partner":[61],"can":[64],"bind":[65],"facilitate":[67],"lncRNA":[68,114],"localization.":[70],"In":[71],"this":[72],"study,":[73],"thus":[75],"harnessed":[76],"recently":[78],"released":[79],"large":[80],"scale":[81],"eCLIP":[83],"data":[84,91,122],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">4</sup>":[87],"RNA-seq":[90,121],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">5</sup>":[94],"available":[95],"in":[96,141,168,176],"K562":[97,169],"HepG2":[99,177],"cell":[100,178],"lines":[101],"characterize":[103],"lncRNA-RBP":[104],"interactome":[105],"uncovered":[107],"potential":[108],"factors":[109],"mechanisms":[112],"determining":[113],"retention.":[116],"Analyses":[117],"identified":[123],"enriched":[125,140],"(nuc-lncRNAs)":[127],"confirmed":[129],"eRNAs":[133],"(enhancer":[134],"lncRNAs)":[136],"relatively":[138],"both":[142],"cells.":[143],"By":[144],"integrating":[145],"RBP":[147],"binding":[148],"profiles,":[149],"next":[151],"generated":[152],"RBP/nuc-lncRNA":[153],"interaction":[154],"map":[155],"identify":[157],"nuc-lncRNAs":[161],"including":[162],"HNRNPU,":[163],"SAFB2,":[164],"KHSRP":[165],"KHDRBS1":[167],"HRNPNPC":[171],"as":[172,174],"HNRNPL":[175],"lines.":[179],"To":[180],"further":[181],"confirm":[182],"above":[184],"findings,":[185],"HNRNPU":[186],"was":[187],"knocked":[188],"down":[189],"which":[191],"led":[192],"retention":[195],"panel":[198],"lncRNAs.":[200]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
