{"id":"https://openalex.org/W3128959893","doi":"https://doi.org/10.1109/bibm49941.2020.9313250","title":"Star-BiLSTM-LAN for Document-level Mutation-Disease Relation Extraction from Biomedical Literature","display_name":"Star-BiLSTM-LAN for Document-level Mutation-Disease Relation Extraction from Biomedical Literature","publication_year":2020,"publication_date":"2020-12-16","ids":{"openalex":"https://openalex.org/W3128959893","doi":"https://doi.org/10.1109/bibm49941.2020.9313250","mag":"3128959893"},"language":"en","primary_location":{"id":"doi:10.1109/bibm49941.2020.9313250","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm49941.2020.9313250","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100612560","display_name":"Xu Yuan","orcid":"https://orcid.org/0000-0002-0492-0870"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuan Xu","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051597671","display_name":"Zhihao Yang","orcid":"https://orcid.org/0000-0001-6186-2024"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihao Yang","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068319039","display_name":"Yawen Song","orcid":"https://orcid.org/0000-0003-3547-2860"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yawen Song","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100765839","display_name":"Zhiheng Li","orcid":"https://orcid.org/0000-0002-3406-2141"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiheng Li","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100436099","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0003-1810-3019"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["Health Administration and Medical Information, Beijing Institute, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Administration and Medical Information, Beijing Institute, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100343699","display_name":"Yin Zhang","orcid":"https://orcid.org/0000-0001-6986-4227"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yin Zhang","raw_affiliation_strings":["Health Administration and Medical Information, Beijing Institute, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Administration and Medical Information, Beijing Institute, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023931221","display_name":"Hongfei Lin","orcid":"https://orcid.org/0000-0003-0872-7688"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfei Lin","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100768940","display_name":"Jian Wang","orcid":"https://orcid.org/0000-0002-8494-154X"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Wang","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4062,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.71595882,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"357","last_page":"362"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9943000078201294,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.7460165023803711},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6886647343635559},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.5433365702629089},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5146092176437378},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5000782012939453},{"id":"https://openalex.org/keywords/star","display_name":"Star (game theory)","score":0.4679630696773529},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.41411030292510986},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.36507174372673035},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.33107876777648926},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3274760842323303},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.31972241401672363},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.105680912733078},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10125857591629028}],"concepts":[{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.7460165023803711},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6886647343635559},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.5433365702629089},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5146092176437378},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5000782012939453},{"id":"https://openalex.org/C2780897414","wikidata":"https://www.wikidata.org/wiki/Q7600592","display_name":"Star (game theory)","level":2,"score":0.4679630696773529},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.41411030292510986},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36507174372673035},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.33107876777648926},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3274760842323303},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.31972241401672363},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.105680912733078},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10125857591629028},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm49941.2020.9313250","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm49941.2020.9313250","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.5799999833106995}],"awards":[],"funders":[{"id":"https://openalex.org/F4320337504","display_name":"Research and Development","ror":"https://ror.org/027s68j25"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W1551842868","https://openalex.org/W1614298861","https://openalex.org/W1924770834","https://openalex.org/W2016043834","https://openalex.org/W2064675550","https://openalex.org/W2143017621","https://openalex.org/W2147880316","https://openalex.org/W2155454737","https://openalex.org/W2155518941","https://openalex.org/W2171374484","https://openalex.org/W2250521169","https://openalex.org/W2344539657","https://openalex.org/W2515462165","https://openalex.org/W2517194566","https://openalex.org/W2551773530","https://openalex.org/W2600702321","https://openalex.org/W2772102631","https://openalex.org/W2779457220","https://openalex.org/W2785059970","https://openalex.org/W2808142148","https://openalex.org/W2889224519","https://openalex.org/W2925613093","https://openalex.org/W2952179106","https://openalex.org/W2963020213","https://openalex.org/W2963912736","https://openalex.org/W2964026782","https://openalex.org/W2964121744","https://openalex.org/W2970400306","https://openalex.org/W3004541293"],"related_works":["https://openalex.org/W2976808399","https://openalex.org/W2609844752","https://openalex.org/W2981341912","https://openalex.org/W4285246823","https://openalex.org/W4226278302","https://openalex.org/W4385734297","https://openalex.org/W4221160509","https://openalex.org/W2547211086","https://openalex.org/W2538200646","https://openalex.org/W2888033806"],"abstract_inverted_index":{"Relations":[0],"between":[1],"mutations":[2],"and":[3,14,43,68,81,97,107,127,130,137,142],"diseases":[4],"hiding":[5],"in":[6],"biomedical":[7],"literature":[8],"are":[9,38,140],"valuable":[10],"for":[11,28,116],"the":[12,45,78,82,101,117,132,146,150],"analysis":[13],"interpretation":[15],"of":[16,47,119,135,156],"many":[17],"complex":[18],"diseases,":[19],"which":[20,139],"can":[21,109],"help":[22],"explore":[23],"more":[24],"effective":[25],"treatment":[26],"options":[27],"corresponding":[29],"diseases.":[30],"Most":[31],"current":[32],"document-level":[33,60],"mutation-disease":[34,61],"relation":[35],"extraction":[36],"methods":[37],"based":[39],"on":[40,124,158],"classification":[41],"approaches":[42],"suffer":[44],"lack":[46],"ability":[48,93],"to":[49,94],"extract":[50],"inter-sentential":[51],"relations.":[52],"To":[53],"solve":[54],"this":[55,88],"problem,":[56],"we":[57],"regard":[58],"extracting":[59],"relations":[62],"as":[63],"a":[64,70,91],"sequence":[65],"tagging":[66],"task":[67,118],"propose":[69],"neural":[71],"network-based":[72],"method":[73,89,152],"called":[74],"Star-BiLSTM-LAN.":[75],"By":[76],"combining":[77],"star":[79],"transformer":[80],"Bi-directional":[83],"Long":[84],"Short-Term":[85],"Memory":[86],"network,":[87],"achieves":[90,131,153],"strong":[92],"capture":[95],"semantic":[96],"syntactic":[98],"information":[99],"at":[100],"document":[102],"level":[103],"from":[104],"different":[105],"aspects,":[106],"it":[108],"discover":[110],"internal":[111],"representations":[112],"that":[113],"prove":[114],"useful":[115],"interest.":[120],"Star-BiLSTM-LAN":[121],"is":[122],"evaluated":[123],"EMU":[125],"BCa":[126],"PCa":[128],"datasets,":[129],"state-of-the-art":[133],"F-scores":[134],"89.20%":[136],"90.43%,":[138],"4.70%":[141],"2.43%":[143],"higher":[144],"than":[145],"baseline,":[147],"respectively.":[148],"Also,":[149],"proposed":[151],"an":[154],"F-score":[155],"94.40%":[157],"BRONCO":[159],"dataset.":[160]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
