{"id":"https://openalex.org/W3013333217","doi":"https://doi.org/10.1109/bibm47256.2019.9043355","title":"A metagenomic content and knowledge management ecosystem platform","display_name":"A metagenomic content and knowledge management ecosystem platform","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W3013333217","doi":"https://doi.org/10.1109/bibm47256.2019.9043355","mag":"3013333217"},"language":"en","primary_location":{"id":"doi:10.1109/bibm47256.2019.9043355","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.9043355","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085225179","display_name":"Binh Vu","orcid":"https://orcid.org/0000-0001-8567-1193"},"institutions":[{"id":"https://openalex.org/I120691247","display_name":"University of Hagen","ror":"https://ror.org/04tkkr536","country_code":"DE","type":"education","lineage":["https://openalex.org/I120691247"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Binh Vu","raw_affiliation_strings":["FernUniversit\u00e4t in Hagen Hagen, Germany","FernUniversitat in Hagen, Hagen, Germany"],"affiliations":[{"raw_affiliation_string":"FernUniversit\u00e4t in Hagen Hagen, Germany","institution_ids":["https://openalex.org/I120691247"]},{"raw_affiliation_string":"FernUniversitat in Hagen, Hagen, Germany","institution_ids":["https://openalex.org/I120691247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034363153","display_name":"Yanxin Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100923","display_name":"Munster Technological University","ror":"https://ror.org/013xpqh61","country_code":"IE","type":"facility","lineage":["https://openalex.org/I4210100923"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Yanxin Wu","raw_affiliation_strings":["Cork Institute of Technology Cork, Ireland","Cork Institute of Technology, Cork, Ireland"],"affiliations":[{"raw_affiliation_string":"Cork Institute of Technology Cork, Ireland","institution_ids":["https://openalex.org/I4210100923"]},{"raw_affiliation_string":"Cork Institute of Technology, Cork, Ireland","institution_ids":["https://openalex.org/I4210100923"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046400614","display_name":"Haithem Afli","orcid":"https://orcid.org/0000-0002-7449-4707"},"institutions":[{"id":"https://openalex.org/I4210100923","display_name":"Munster Technological University","ror":"https://ror.org/013xpqh61","country_code":"IE","type":"facility","lineage":["https://openalex.org/I4210100923"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Haithem Afli","raw_affiliation_strings":["Cork Institute of Technology Cork, Ireland","Cork Institute of Technology, Cork, Ireland"],"affiliations":[{"raw_affiliation_string":"Cork Institute of Technology Cork, Ireland","institution_ids":["https://openalex.org/I4210100923"]},{"raw_affiliation_string":"Cork Institute of Technology, Cork, Ireland","institution_ids":["https://openalex.org/I4210100923"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112070100","display_name":"Paul Mc Kevitt","orcid":null},"institutions":[{"id":"https://openalex.org/I4210124952","display_name":"Research Institute for Telecommunication Cooperation","ror":"https://ror.org/02wena850","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210124952"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Paul Mc Kevitt","raw_affiliation_strings":["Research Institute for Telecommunication and Cooperation Dortmund, Germany","Research Institute for Telecommunication and Cooperation, Dortmund, Germany"],"affiliations":[{"raw_affiliation_string":"Research Institute for Telecommunication and Cooperation Dortmund, Germany","institution_ids":["https://openalex.org/I4210124952"]},{"raw_affiliation_string":"Research Institute for Telecommunication and Cooperation, Dortmund, Germany","institution_ids":["https://openalex.org/I4210124952"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046492167","display_name":"Paul Walsh","orcid":"https://orcid.org/0000-0002-4988-6901"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Paul Walsh","raw_affiliation_strings":["Nsilico Life Science Ltd. Cork, Ireland","Nsilico Life Science Ltd., Cork, Ireland"],"affiliations":[{"raw_affiliation_string":"Nsilico Life Science Ltd. Cork, Ireland","institution_ids":[]},{"raw_affiliation_string":"Nsilico Life Science Ltd., Cork, Ireland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067553162","display_name":"Felix Engel","orcid":"https://orcid.org/0000-0002-3060-7052"},"institutions":[{"id":"https://openalex.org/I4210124952","display_name":"Research Institute for Telecommunication Cooperation","ror":"https://ror.org/02wena850","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210124952"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Felix Engel","raw_affiliation_strings":["Research Institute for Telecommunication and Cooperation Dortmund, Germany","Research Institute for Telecommunication and Cooperation, Dortmund, Germany"],"affiliations":[{"raw_affiliation_string":"Research Institute for Telecommunication and Cooperation Dortmund, Germany","institution_ids":["https://openalex.org/I4210124952"]},{"raw_affiliation_string":"Research Institute for Telecommunication and Cooperation, Dortmund, Germany","institution_ids":["https://openalex.org/I4210124952"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019326298","display_name":"Michael Fuchs","orcid":"https://orcid.org/0000-0002-1730-9464"},"institutions":[{"id":"https://openalex.org/I4210097094","display_name":"Wilhelm B\u00fcchner Hochschule","ror":"https://ror.org/00vkbtf98","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210097094"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Fuchs","raw_affiliation_strings":["Wilhelm Buchner University of Applied Sciences\nPfungstadt, Germany","Wilhelm Buchner University of Applied Sciences, Pfungstadt, Germany"],"affiliations":[{"raw_affiliation_string":"Wilhelm Buchner University of Applied Sciences\nPfungstadt, Germany","institution_ids":["https://openalex.org/I4210097094"]},{"raw_affiliation_string":"Wilhelm Buchner University of Applied Sciences, Pfungstadt, Germany","institution_ids":["https://openalex.org/I4210097094"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086429143","display_name":"Matthias Hemmje","orcid":"https://orcid.org/0000-0001-8293-2802"},"institutions":[{"id":"https://openalex.org/I120691247","display_name":"University of Hagen","ror":"https://ror.org/04tkkr536","country_code":"DE","type":"education","lineage":["https://openalex.org/I120691247"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Hemmje","raw_affiliation_strings":["FernUniversit\u00e4t in Hagen Hagen, Germany","FernUniversitat in Hagen, Hagen, Germany"],"affiliations":[{"raw_affiliation_string":"FernUniversit\u00e4t in Hagen Hagen, Germany","institution_ids":["https://openalex.org/I120691247"]},{"raw_affiliation_string":"FernUniversitat in Hagen, Hagen, Germany","institution_ids":["https://openalex.org/I120691247"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5085225179"],"corresponding_institution_ids":["https://openalex.org/I120691247"],"apc_list":null,"apc_paid":null,"fwci":1.216,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.90461031,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.958299994468689,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.958299994468689,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9470000267028809,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9377999901771545,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.8181589841842651},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6141085624694824},{"id":"https://openalex.org/keywords/ecosystem","display_name":"Ecosystem","score":0.5974308252334595},{"id":"https://openalex.org/keywords/content-management","display_name":"Content management","score":0.4520348608493805},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.3232421875},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2682158648967743},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.19227173924446106},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08939751982688904}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8181589841842651},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6141085624694824},{"id":"https://openalex.org/C110872660","wikidata":"https://www.wikidata.org/wiki/Q37813","display_name":"Ecosystem","level":2,"score":0.5974308252334595},{"id":"https://openalex.org/C33039251","wikidata":"https://www.wikidata.org/wiki/Q173373","display_name":"Content management","level":2,"score":0.4520348608493805},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.3232421875},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2682158648967743},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.19227173924446106},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08939751982688904},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm47256.2019.9043355","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.9043355","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.6399999856948853,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W2134892743","https://openalex.org/W2622472475","https://openalex.org/W2771150462","https://openalex.org/W2884421305","https://openalex.org/W2901220968","https://openalex.org/W2911592650","https://openalex.org/W2912500208","https://openalex.org/W2913963841","https://openalex.org/W2914741745","https://openalex.org/W2949216712","https://openalex.org/W2978105459"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W638577851","https://openalex.org/W2968354375","https://openalex.org/W2359440920","https://openalex.org/W2889550857","https://openalex.org/W3013372948","https://openalex.org/W3135997498","https://openalex.org/W4242417330"],"abstract_inverted_index":{"The":[0,107],"reduced":[1],"cost":[2],"of":[3,41,50,124,151,174],"DNA":[4],"sequencing":[5,35,71],"allows":[6],"metagenomics":[7,125,153],"to":[8,67,77,87,145],"be":[9,78],"applied":[10],"on":[11,128],"a":[12,96],"larger":[13],"scale.":[14],"With":[15],"metagenomic":[16,100],"analysis,":[17],"we":[18,158],"have":[19],"better":[20],"insight":[21],"into":[22],"supplement":[23],"usage,":[24],"methane":[25],"production,":[26],"and":[27,55,65,73,80,89,115,131,137,140,149,171,178],"feed":[28],"conversion":[29],"efficiency":[30,150],"in":[31,47,83,112,121],"livestock":[32],"systems.":[33],"Nevertheless,":[34],"machines":[36],"generate":[37],"an":[38,162],"enormous":[39],"amount":[40],"complex":[42],"data.":[43],"Conventional":[44],"methods":[45],"used":[46],"the":[48,70,122,147,175],"analysis":[49,74,101,141],"genomic":[51],"data":[52],"involve":[53],"pre-processing":[54],"synchronous":[56],"reconstruction":[57],"by":[58,126],"multiple":[59],"systems,":[60],"which":[61],"is":[62,105],"time":[63],"consuming":[64],"prone":[66],"failure.":[68],"Furthermore,":[69],"datasets":[72],"results":[75,181],"need":[76],"organized":[79],"stored":[81],"properly":[82],"order":[84],"for":[85,99],"scientists":[86],"search":[88],"access":[90],"them.":[91],"To":[92],"tackle":[93],"these":[94],"challenges,":[95],"new":[97],"workflow":[98],"with":[102,119],"improved":[103,129],"infrastructure":[104,163,176],"needed.":[106],"MetaPlat":[108],"project":[109],"supports":[110],"experts":[111],"both":[113],"academic":[114],"non-academic":[116],"sectors":[117],"dealing":[118],"challenges":[120],"field":[123],"focusing":[127],"hardware":[130],"software":[132],"platforms.":[133],"High-performance,":[134],"fault-tolerant,":[135],"flexible,":[136],"scalable":[138],"processors":[139],"systems":[142],"will":[143],"help":[144],"increase":[146],"effectiveness":[148],"current":[152],"studies.":[154],"In":[155],"this":[156],"paper,":[157],"propose":[159],"such":[160,167],"as":[161,168],"applying":[164],"emerging":[165],"technologies,":[166],"Kafka,":[169],"Docker,":[170],"Hadoop.":[172],"Details":[173],"solution":[177],"some":[179],"preliminary":[180],"are":[182],"also":[183],"discussed.":[184]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
