{"id":"https://openalex.org/W3004691009","doi":"https://doi.org/10.1109/bibm47256.2019.8983421","title":"Improving Disease Named Entity Recognition for Clinical Trial Matching","display_name":"Improving Disease Named Entity Recognition for Clinical Trial Matching","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W3004691009","doi":"https://doi.org/10.1109/bibm47256.2019.8983421","mag":"3004691009"},"language":"en","primary_location":{"id":"doi:10.1109/bibm47256.2019.8983421","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983421","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072696208","display_name":"Md Abdullah Al Hafiz Khan","orcid":"https://orcid.org/0000-0002-6180-1501"},"institutions":[{"id":"https://openalex.org/I4210131230","display_name":"Philips (United States)","ror":"https://ror.org/03kw6wr76","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210131230"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Md Abdullah Al Hafiz Khan","raw_affiliation_strings":["Philips Research North America, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips Research North America, Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210131230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017119312","display_name":"Nevenka Dimitrova","orcid":"https://orcid.org/0000-0003-4091-9233"},"institutions":[{"id":"https://openalex.org/I4210131230","display_name":"Philips (United States)","ror":"https://ror.org/03kw6wr76","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210131230"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nevenka Dimitrova","raw_affiliation_strings":["Philips Research North America, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips Research North America, Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210131230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112822876","display_name":"Md. Shamsuzzaman","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131230","display_name":"Philips (United States)","ror":"https://ror.org/03kw6wr76","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210131230"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Md Shamsuzzaman","raw_affiliation_strings":["Philips Research North America, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips Research North America, Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210131230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103789387","display_name":"Sadid A. Hasan","orcid":"https://orcid.org/0000-0002-5665-7752"},"institutions":[{"id":"https://openalex.org/I4210131230","display_name":"Philips (United States)","ror":"https://ror.org/03kw6wr76","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210131230"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sadid A. Hasan","raw_affiliation_strings":["Philips Research North America, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips Research North America, Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210131230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043759639","display_name":"Mohammad S. Sorower","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131230","display_name":"Philips (United States)","ror":"https://ror.org/03kw6wr76","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210131230"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mohammad S Sorower","raw_affiliation_strings":["Philips Research North America, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips Research North America, Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210131230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074408622","display_name":"Joey Liu","orcid":"https://orcid.org/0000-0002-1417-957X"},"institutions":[{"id":"https://openalex.org/I4210131230","display_name":"Philips (United States)","ror":"https://ror.org/03kw6wr76","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210131230"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joey Liu","raw_affiliation_strings":["Philips Research North America, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips Research North America, Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210131230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068150504","display_name":"Vivek V. Datla","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131230","display_name":"Philips (United States)","ror":"https://ror.org/03kw6wr76","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210131230"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vivek Datla","raw_affiliation_strings":["Philips Research North America, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips Research North America, Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210131230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006059868","display_name":"Mladen Milo\u0161evi\u0107","orcid":"https://orcid.org/0000-0001-8978-3475"},"institutions":[{"id":"https://openalex.org/I4210131230","display_name":"Philips (United States)","ror":"https://ror.org/03kw6wr76","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210131230"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mladen Milosevic","raw_affiliation_strings":["Philips Research North America, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips Research North America, Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210131230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089341834","display_name":"Gabe Mankovich","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131230","display_name":"Philips (United States)","ror":"https://ror.org/03kw6wr76","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210131230"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gabe Mankovich","raw_affiliation_strings":["Philips Research North America, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips Research North America, Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210131230"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033082674","display_name":"Rob van Ommering","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131230","display_name":"Philips (United States)","ror":"https://ror.org/03kw6wr76","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122849","https://openalex.org/I4210131230"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rob van Ommering","raw_affiliation_strings":["Philips Research North America, Cambridge, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Philips Research North America, Cambridge, MA, USA","institution_ids":["https://openalex.org/I4210131230"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":10,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2892,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.68836479,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7180963754653931},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.547153115272522},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.5365832448005676},{"id":"https://openalex.org/keywords/entity-linking","display_name":"Entity linking","score":0.47163864970207214},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4668142795562744},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.43816906213760376},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3434827923774719},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.33179113268852234},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.22419986128807068},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09487113356590271},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.07730028033256531},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.07265934348106384},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.057681262493133545}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7180963754653931},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.547153115272522},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.5365832448005676},{"id":"https://openalex.org/C96711827","wikidata":"https://www.wikidata.org/wiki/Q17012245","display_name":"Entity linking","level":3,"score":0.47163864970207214},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4668142795562744},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.43816906213760376},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3434827923774719},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33179113268852234},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.22419986128807068},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09487113356590271},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.07730028033256531},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.07265934348106384},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.057681262493133545},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm47256.2019.8983421","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983421","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6399999856948853,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1940872118","https://openalex.org/W2169099542","https://openalex.org/W2178441628","https://openalex.org/W2250539671","https://openalex.org/W2469314752","https://openalex.org/W2734608416","https://openalex.org/W2735288945","https://openalex.org/W2741833606","https://openalex.org/W2743028754","https://openalex.org/W2773079901","https://openalex.org/W2777949341","https://openalex.org/W2793265220","https://openalex.org/W2896457183","https://openalex.org/W2905530341","https://openalex.org/W2955483668","https://openalex.org/W2962739339","https://openalex.org/W2963341956","https://openalex.org/W2963442256","https://openalex.org/W2963466151","https://openalex.org/W2968189201","https://openalex.org/W3007330368","https://openalex.org/W3013322209","https://openalex.org/W4288086540","https://openalex.org/W4289366653","https://openalex.org/W6685799161","https://openalex.org/W6755207826","https://openalex.org/W6757758711","https://openalex.org/W6774266146"],"related_works":["https://openalex.org/W2186562580","https://openalex.org/W3198729192","https://openalex.org/W3000685722","https://openalex.org/W4255258373","https://openalex.org/W2593907245","https://openalex.org/W2520117834","https://openalex.org/W4313162113","https://openalex.org/W2078793151","https://openalex.org/W1884363728","https://openalex.org/W4390279576"],"abstract_inverted_index":{"Disease":[0],"named":[1],"entity":[2],"recognition":[3],"(NER)":[4],"is":[5,20],"an":[6],"important":[7],"enabling":[8],"technology":[9],"to":[10,30,51],"develop":[11],"various":[12],"downstream":[13],"biomedical":[14,57],"natural":[15],"language":[16],"processing":[17],"applications.":[18],"This":[19],"a":[21,82,106,120],"challenging":[22],"task,":[23],"which":[24],"requires":[25],"addressing":[26],"potential":[27],"ambiguities":[28],"due":[29],"variable":[31],"contextual":[32,73,94],"usage":[33],"of":[34,134],"the":[35,125,132,135],"disease":[36,84],"name":[37],"mentions":[38],"in":[39,105],"clinical":[40,44,53,88,121],"texts.":[41],"In":[42,77],"particular,":[43],"trial":[45,89,122],"texts":[46,90],"have":[47],"unique":[48],"complexities":[49],"compared":[50],"patient-focused":[52],"reports":[54],"or":[55],"information-rich":[56],"research":[58],"articles,":[59],"as":[60],"they":[61],"typically":[62],"define":[63],"drug":[64],"testing":[65],"eligibility":[66],"requirements":[67],"for":[68,87],"patient":[69],"cohorts":[70],"via":[71],"compound":[72],"and":[74,102,117,124],"logical":[75],"relationships.":[76],"this":[78],"paper,":[79],"we":[80],"propose":[81],"novel":[83],"NER":[85],"model":[86],"by":[91],"using":[92],"deep":[93],"embeddings":[95,104],"with":[96],"relevant":[97],"domain-specific":[98],"features,":[99],"word":[100],"embeddings,":[101],"character":[103],"bidirectional":[107],"long":[108],"short-term":[109],"memory":[110],"network-conditional":[111],"random":[112],"field":[113],"(BiLSTM-CRF)":[114],"framework.":[115],"Experiments":[116],"analyses":[118],"on":[119],"dataset":[123,130],"benchmark":[126],"NCBI":[127],"scientific":[128],"article":[129],"show":[131],"effectiveness":[133],"proposed":[136],"model.":[137]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}