{"id":"https://openalex.org/W3004844052","doi":"https://doi.org/10.1109/bibm47256.2019.8983370","title":"Fine-tuning BERT for Joint Entity and Relation Extraction in Chinese Medical Text","display_name":"Fine-tuning BERT for Joint Entity and Relation Extraction in Chinese Medical Text","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W3004844052","doi":"https://doi.org/10.1109/bibm47256.2019.8983370","mag":"3004844052"},"language":"en","primary_location":{"id":"doi:10.1109/bibm47256.2019.8983370","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983370","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022265956","display_name":"Kui Xue","orcid":null},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kui Xue","raw_affiliation_strings":["School of Information Science and Engineering, East China University of Science and Technology,Shanghai,China,200237","School of Information Science and Engineering, East China University of Science and Technology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, East China University of Science and Technology,Shanghai,China,200237","institution_ids":["https://openalex.org/I143593769"]},{"raw_affiliation_string":"School of Information Science and Engineering, East China University of Science and Technology, Shanghai, China","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071839367","display_name":"Yangming Zhou","orcid":"https://orcid.org/0000-0002-4254-6517"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yangming Zhou","raw_affiliation_strings":["School of Information Science and Engineering, East China University of Science and Technology,Shanghai,China,200237","School of Information Science and Engineering, East China University of Science and Technology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, East China University of Science and Technology,Shanghai,China,200237","institution_ids":["https://openalex.org/I143593769"]},{"raw_affiliation_string":"School of Information Science and Engineering, East China University of Science and Technology, Shanghai, China","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100622932","display_name":"Zhiyuan Ma","orcid":"https://orcid.org/0000-0003-2153-5824"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiyuan Ma","raw_affiliation_strings":["School of Information Science and Engineering, East China University of Science and Technology,Shanghai,China,200237","School of Information Science and Engineering, East China University of Science and Technology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, East China University of Science and Technology,Shanghai,China,200237","institution_ids":["https://openalex.org/I143593769"]},{"raw_affiliation_string":"School of Information Science and Engineering, East China University of Science and Technology, Shanghai, China","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005820786","display_name":"Tong Ruan","orcid":"https://orcid.org/0000-0002-3546-8338"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tong Ruan","raw_affiliation_strings":["School of Information Science and Engineering, East China University of Science and Technology,Shanghai,China,200237","School of Information Science and Engineering, East China University of Science and Technology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, East China University of Science and Technology,Shanghai,China,200237","institution_ids":["https://openalex.org/I143593769"]},{"raw_affiliation_string":"School of Information Science and Engineering, East China University of Science and Technology, Shanghai, China","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100616495","display_name":"Huanhuan Zhang","orcid":"https://orcid.org/0000-0001-5745-1775"},"institutions":[{"id":"https://openalex.org/I143593769","display_name":"East China University of Science and Technology","ror":"https://ror.org/01vyrm377","country_code":"CN","type":"education","lineage":["https://openalex.org/I143593769"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huanhuan Zhang","raw_affiliation_strings":["School of Information Science and Engineering, East China University of Science and Technology,Shanghai,China,200237","School of Information Science and Engineering, East China University of Science and Technology, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Information Science and Engineering, East China University of Science and Technology,Shanghai,China,200237","institution_ids":["https://openalex.org/I143593769"]},{"raw_affiliation_string":"School of Information Science and Engineering, East China University of Science and Technology, Shanghai, China","institution_ids":["https://openalex.org/I143593769"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085592276","display_name":"Ping He","orcid":"https://orcid.org/0000-0001-7340-9606"},"institutions":[{"id":"https://openalex.org/I4210121283","display_name":"Shanghai Hospital Development Center","ror":"https://ror.org/02zrtve16","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210121283"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ping He","raw_affiliation_strings":["Shanghai Hospital Development Center,Shanghai,China,200041","Shanghai Hospital Development Center, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Hospital Development Center,Shanghai,China,200041","institution_ids":["https://openalex.org/I4210121283"]},{"raw_affiliation_string":"Shanghai Hospital Development Center, Shanghai, China","institution_ids":["https://openalex.org/I4210121283"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":96,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"892","last_page":"897"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8410966396331787},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.7910920977592468},{"id":"https://openalex.org/keywords/joint","display_name":"Joint (building)","score":0.6981134414672852},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6384811401367188},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.6372647285461426},{"id":"https://openalex.org/keywords/structuring","display_name":"Structuring","score":0.6284341216087341},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6144471168518066},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.606827974319458},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5900054574012756},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5703635811805725},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5275770425796509},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.5031108260154724},{"id":"https://openalex.org/keywords/layer","display_name":"Layer (electronics)","score":0.49181583523750305},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.43506455421447754},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.37391602993011475},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.25849688053131104},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.13486513495445251}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8410966396331787},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.7910920977592468},{"id":"https://openalex.org/C18555067","wikidata":"https://www.wikidata.org/wiki/Q8375051","display_name":"Joint (building)","level":2,"score":0.6981134414672852},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6384811401367188},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.6372647285461426},{"id":"https://openalex.org/C2775945657","wikidata":"https://www.wikidata.org/wiki/Q381442","display_name":"Structuring","level":2,"score":0.6284341216087341},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6144471168518066},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.606827974319458},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5900054574012756},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5703635811805725},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5275770425796509},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.5031108260154724},{"id":"https://openalex.org/C2779227376","wikidata":"https://www.wikidata.org/wiki/Q6505497","display_name":"Layer (electronics)","level":2,"score":0.49181583523750305},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.43506455421447754},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.37391602993011475},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.25849688053131104},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.13486513495445251},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C170154142","wikidata":"https://www.wikidata.org/wiki/Q150737","display_name":"Architectural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm47256.2019.8983370","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983370","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.8299999833106995}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W225497949","https://openalex.org/W1887754209","https://openalex.org/W1940872118","https://openalex.org/W2033115336","https://openalex.org/W2128535227","https://openalex.org/W2134033474","https://openalex.org/W2162590473","https://openalex.org/W2251622960","https://openalex.org/W2292220633","https://openalex.org/W2587809655","https://openalex.org/W2600659824","https://openalex.org/W2613831280","https://openalex.org/W2808142148","https://openalex.org/W2896457183","https://openalex.org/W2903049352","https://openalex.org/W2915573705","https://openalex.org/W2931252866","https://openalex.org/W2940527294","https://openalex.org/W2951231735","https://openalex.org/W2963341956","https://openalex.org/W2963403868","https://openalex.org/W2963571188","https://openalex.org/W2963907426","https://openalex.org/W2964036454","https://openalex.org/W4285719527","https://openalex.org/W4385245566","https://openalex.org/W6639620173","https://openalex.org/W6683883671","https://openalex.org/W6739901393","https://openalex.org/W6755207826"],"related_works":["https://openalex.org/W2334378031","https://openalex.org/W4387517132","https://openalex.org/W842810586","https://openalex.org/W2916255597","https://openalex.org/W4319940250","https://openalex.org/W3095980030","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W4379379356"],"abstract_inverted_index":{"Entity":[0],"and":[1,48,67,114,120,128],"relation":[2,68,115],"extraction":[3,15,69],"is":[4],"the":[5,13,18,26,32,36,39,64,88,108],"necessary":[6],"step":[7],"in":[8,25,46],"structuring":[9],"medical":[10],"text.":[11],"However,":[12],"feature":[14,89],"ability":[16,91],"of":[17,92,110],"bidirectional":[19],"long":[20],"short":[21],"term":[22],"memory":[23],"network":[24],"existing":[27],"model":[28,41,62,72,77],"does":[29],"not":[30],"achieve":[31],"best":[33],"effect.":[34],"At":[35],"same":[37],"time,":[38],"language":[40,51,76],"has":[42],"achieved":[43],"excellent":[44],"results":[45,97],"more":[47,49],"natural":[50],"processing":[52],"tasks.":[53],"In":[54],"this":[55],"paper,":[56],"we":[57],"present":[58],"a":[59],"focused":[60],"attention":[61,84],"for":[63],"joint":[65,79],"entity":[66,112],"task.":[70],"Our":[71],"integrates":[73],"well-known":[74],"BERT":[75],"into":[78],"learning":[80],"through":[81],"dynamic":[82],"range":[83],"mechanism,":[85],"thus":[86],"improving":[87],"representation":[90],"shared":[93],"parameter":[94],"layer.":[95],"Experimental":[96],"on":[98],"coronary":[99],"angiography":[100],"texts":[101],"collected":[102],"from":[103],"Shuguang":[104],"Hospital":[105],"show":[106],"that":[107],"F1-scores":[109],"named":[111],"recognition":[113],"classification":[116],"tasks":[117],"reach":[118],"96.89%":[119],"88.51%,":[121],"which":[122],"outperform":[123],"state-of-the-art":[124],"methods":[125],"by":[126],"1.65%":[127],"1.22%,":[129],"respectively.":[130]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":27},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":18},{"year":2020,"cited_by_count":15}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
