{"id":"https://openalex.org/W3004873714","doi":"https://doi.org/10.1109/bibm47256.2019.8983300","title":"Pseudotime Based Discovery of Breast Cancer Heterogeneity","display_name":"Pseudotime Based Discovery of Breast Cancer Heterogeneity","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W3004873714","doi":"https://doi.org/10.1109/bibm47256.2019.8983300","mag":"3004873714"},"language":"en","primary_location":{"id":"doi:10.1109/bibm47256.2019.8983300","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983300","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049253626","display_name":"Tasmia Aqila","orcid":null},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tasmia Aqila","raw_affiliation_strings":["Florida International University,Computing and Information Sciences,Miami,FL,USA","Computing and Information Sciences, Florida International University, Miami, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Florida International University,Computing and Information Sciences,Miami,FL,USA","institution_ids":["https://openalex.org/I19700959"]},{"raw_affiliation_string":"Computing and Information Sciences, Florida International University, Miami, FL, USA","institution_ids":["https://openalex.org/I19700959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017493688","display_name":"Abdullah Al Mamun","orcid":"https://orcid.org/0000-0001-8597-8590"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abdullah Al Mamun","raw_affiliation_strings":["Florida International University,Computing and Information Sciences,Miami,FL,USA","Computing and Information Sciences, Florida International University, Miami, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Florida International University,Computing and Information Sciences,Miami,FL,USA","institution_ids":["https://openalex.org/I19700959"]},{"raw_affiliation_string":"Computing and Information Sciences, Florida International University, Miami, FL, USA","institution_ids":["https://openalex.org/I19700959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045295085","display_name":"Ananda Mohan Mondal","orcid":"https://orcid.org/0000-0002-4005-9942"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ananda Mohan Mondal","raw_affiliation_strings":["Florida International University,Computing and Information Sciences,Miami,FL,USA","Computing and Information Sciences, Florida International University, Miami, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Florida International University,Computing and Information Sciences,Miami,FL,USA","institution_ids":["https://openalex.org/I19700959"]},{"raw_affiliation_string":"Computing and Information Sciences, Florida International University, Miami, FL, USA","institution_ids":["https://openalex.org/I19700959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I19700959"],"apc_list":null,"apc_paid":null,"fwci":0.3314,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.5953996,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"2049","last_page":"2054"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.98089998960495,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6166712045669556},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.5984237790107727},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5029112696647644},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43205004930496216},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.18535488843917847},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.08561909198760986}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6166712045669556},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.5984237790107727},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5029112696647644},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43205004930496216},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.18535488843917847},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.08561909198760986}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm47256.2019.8983300","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983300","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7400000095367432,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1874466506","https://openalex.org/W1893680466","https://openalex.org/W1984883254","https://openalex.org/W2001246746","https://openalex.org/W2071949631","https://openalex.org/W2127218421","https://openalex.org/W2132619562","https://openalex.org/W2143426320","https://openalex.org/W2187089797","https://openalex.org/W2338081296","https://openalex.org/W2373831850","https://openalex.org/W2767377392","https://openalex.org/W2889646458","https://openalex.org/W2911964244","https://openalex.org/W4251002338","https://openalex.org/W6678914141"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2478288626","https://openalex.org/W4391913857","https://openalex.org/W2350741829","https://openalex.org/W2530322880"],"abstract_inverted_index":{"Breast":[0],"cancer":[1,36,48,54,65,101,105,124,135,148,170,182,236,254,274],"is":[2,39,94,110,119,213],"highly":[3],"sporadic":[4],"and":[5,33,83,159,219,240],"heterogeneous":[6],"in":[7,20,74,215,226,252],"nature.":[8],"Even":[9],"the":[10,43,53,62,70,79,97,104,123,155,166,202,227,231,247,263],"patients":[11,55,106,125,183],"with":[12],"same":[13],"clinical":[14,232],"stage":[15],"do":[16],"not":[17],"cluster":[18],"together":[19],"terms":[21],"of":[22,46,64,86,91,99,134,154,168,179,189,207,222,234,249,265,273],"genomic":[23,50],"profiles":[24,178],"such":[25],"as":[26],"mRNA":[27,142,176],"expression.":[28],"In":[29,163],"order":[30],"to":[31,41,95,121,200],"prevent":[32],"cure":[34,85],"breast":[35,47,87,100,147,169,181,235,253],"completely,":[37],"it":[38],"essential":[40],"decipher":[42],"detailed":[44,71],"heterogeneity":[45,98,149,251],"at":[49,150,255,269],"level.":[51,258],"Putting":[52],"on":[56,126],"a":[57,116,127,132,256],"time":[58,128,152,271],"scale,":[59,129],"which":[60,212],"represents":[61],"trajectory":[63,133,156,167],"development,":[66,136],"may":[67],"help":[68,77],"discover":[69,96],"heterogeneity.":[72],"This":[73,109],"turn":[75],"would":[76],"establish":[78],"mechanisms":[80],"for":[81],"prevention":[82],"complete":[84],"cancer.":[88],"The":[89,204,217,242,259],"goal":[90],"this":[92,164],"study":[93,229],"by":[102,137,184],"ordering":[103],"using":[107,157,174,193,230],"pseudotime.":[108,186],"achieved":[111],"through":[112],"two":[113],"objectives:":[114],"First,":[115],"computational":[117,244],"framework":[118,245],"developed":[120],"place":[122],"meaning":[130],"construct":[131],"inferring":[138,185],"pseudotime":[139],"from":[140],"static":[141,175],"expression":[143,177],"data;":[144],"Second,":[145],"discovering":[146],"different":[151,270],"periods":[153,272],"statistical":[158],"machine":[160,195],"learning":[161,196],"techniques.":[162],"study,":[165],"progression":[171],"was":[172],"constructed":[173],"1072":[180],"Three":[187],"sets":[188,221],"key":[190],"genes":[191,208,211,223],"discovered":[192,225],"supervised":[194],"techniques":[197],"are":[198,209],"used":[199],"develop":[201],"trajectories.":[203],"first":[205],"set":[206],"PAM50":[210],"available":[214],"literature.":[216],"second":[218],"third":[220],"were":[224],"present":[228],"stages":[233],"(Stage-I,":[237],"Stage-II,":[238],"Stage-III,":[239],"Stage-IV).":[241],"proposed":[243],"has":[246],"capability":[248],"deciphering":[250],"granular":[257],"results":[260],"also":[261],"show":[262],"existence":[264],"multiple":[266],"parallel":[267],"trajectories":[268],"development":[275],"or":[276],"progression.":[277]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
