{"id":"https://openalex.org/W3004467901","doi":"https://doi.org/10.1109/bibm47256.2019.8983296","title":"Accelerated Genomics Data Processing using Memory-Driven Computing","display_name":"Accelerated Genomics Data Processing using Memory-Driven Computing","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W3004467901","doi":"https://doi.org/10.1109/bibm47256.2019.8983296","mag":"3004467901"},"language":"en","primary_location":{"id":"doi:10.1109/bibm47256.2019.8983296","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983296","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063916697","display_name":"Matthias Becker","orcid":"https://orcid.org/0000-0002-7120-4508"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I2801533059","display_name":"German Center for Neurodegenerative Diseases","ror":"https://ror.org/043j0f473","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I2801533059","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I87890613","display_name":"Epigenomics (Germany)","ror":"https://ror.org/0490dah44","country_code":"DE","type":"company","lineage":["https://openalex.org/I87890613"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Matthias Becker","raw_affiliation_strings":["Platform for Single Cell Genomics and Epigenomics at the German Center for Neurodegenerative Diseases (DZNE), University of Bonn,PRECISE,Bonn,Germany","PRECISE, Platform for Single Cell Genomics and Epigenomics at the German Center for Neurodegenerative Diseases (DZNE), University of Bonn, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"Platform for Single Cell Genomics and Epigenomics at the German Center for Neurodegenerative Diseases (DZNE), University of Bonn,PRECISE,Bonn,Germany","institution_ids":["https://openalex.org/I2801533059","https://openalex.org/I87890613","https://openalex.org/I135140700"]},{"raw_affiliation_string":"PRECISE, Platform for Single Cell Genomics and Epigenomics at the German Center for Neurodegenerative Diseases (DZNE), University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I2801533059","https://openalex.org/I87890613","https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055733971","display_name":"Milind Chabbi","orcid":"https://orcid.org/0000-0003-1021-7644"},"institutions":[{"id":"https://openalex.org/I1324840837","display_name":"Hewlett-Packard (United States)","ror":"https://ror.org/059rn9488","country_code":"US","type":"company","lineage":["https://openalex.org/I1324840837"]},{"id":"https://openalex.org/I4210157003","display_name":"Hewlett-Packard (Germany)","ror":"https://ror.org/04pb97k73","country_code":"DE","type":"company","lineage":["https://openalex.org/I1324840837","https://openalex.org/I4210157003"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Milind Chabbi","raw_affiliation_strings":["Hewlett Packard Labs,Palo Alto,USA","Hewlett Packard Enterprise, Ratingen, Germany"],"affiliations":[{"raw_affiliation_string":"Hewlett Packard Labs,Palo Alto,USA","institution_ids":["https://openalex.org/I1324840837"]},{"raw_affiliation_string":"Hewlett Packard Enterprise, Ratingen, Germany","institution_ids":["https://openalex.org/I4210157003"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000907775","display_name":"Stefanie Warnat\u2010Herresthal","orcid":"https://orcid.org/0000-0002-0890-5774"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefanie Warnat-Herresthal","raw_affiliation_strings":["LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016656910","display_name":"Umesh Worlikar","orcid":null},"institutions":[{"id":"https://openalex.org/I1324840837","display_name":"Hewlett-Packard (United States)","ror":"https://ror.org/059rn9488","country_code":"US","type":"company","lineage":["https://openalex.org/I1324840837"]},{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I2801533059","display_name":"German Center for Neurodegenerative Diseases","ror":"https://ror.org/043j0f473","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I2801533059","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I87890613","display_name":"Epigenomics (Germany)","ror":"https://ror.org/0490dah44","country_code":"DE","type":"company","lineage":["https://openalex.org/I87890613"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Umesh Worlikar","raw_affiliation_strings":["Platform for Single Cell Genomics and Epigenomics at the German Center for Neurodegenerative Diseases (DZNE), University of Bonn,PRECISE,Bonn,Germany","Hewlett Packard Labs, Palo Alto, USA"],"affiliations":[{"raw_affiliation_string":"Platform for Single Cell Genomics and Epigenomics at the German Center for Neurodegenerative Diseases (DZNE), University of Bonn,PRECISE,Bonn,Germany","institution_ids":["https://openalex.org/I2801533059","https://openalex.org/I87890613","https://openalex.org/I135140700"]},{"raw_affiliation_string":"Hewlett Packard Labs, Palo Alto, USA","institution_ids":["https://openalex.org/I1324840837"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005631780","display_name":"Shobhit Agrawal","orcid":null},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Shobhit Agrawal","raw_affiliation_strings":["LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012082877","display_name":"Jaydeep Bhat","orcid":"https://orcid.org/0000-0002-5123-3125"},"institutions":[{"id":"https://openalex.org/I1324840837","display_name":"Hewlett-Packard (United States)","ror":"https://ror.org/059rn9488","country_code":"US","type":"company","lineage":["https://openalex.org/I1324840837"]},{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Jaydeep Bhat","raw_affiliation_strings":["LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","Hewlett Packard Labs, Palo Alto, USA"],"affiliations":[{"raw_affiliation_string":"LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Hewlett Packard Labs, Palo Alto, USA","institution_ids":["https://openalex.org/I1324840837"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063080199","display_name":"Jonas Schulte-Schrepping","orcid":"https://orcid.org/0000-0001-7333-8924"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jonas Schulte-Schrepping","raw_affiliation_strings":["LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082416154","display_name":"Kevin Ba\u00dfler","orcid":"https://orcid.org/0000-0002-4780-372X"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I2801533059","display_name":"German Center for Neurodegenerative Diseases","ror":"https://ror.org/043j0f473","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I2801533059","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I87890613","display_name":"Epigenomics (Germany)","ror":"https://ror.org/0490dah44","country_code":"DE","type":"company","lineage":["https://openalex.org/I87890613"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kevin Bassler","raw_affiliation_strings":["LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","PRECISE, Platform for Single Cell Genomics and Epigenomics at the German Center for Neurodegenerative Diseases (DZNE), University of Bonn, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"PRECISE, Platform for Single Cell Genomics and Epigenomics at the German Center for Neurodegenerative Diseases (DZNE), University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I2801533059","https://openalex.org/I87890613","https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024806127","display_name":"Patrick Guenther","orcid":null},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Patrick Guenther","raw_affiliation_strings":["LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073557750","display_name":"Hartmut Schultze","orcid":"https://orcid.org/0000-0001-5008-7851"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]},{"id":"https://openalex.org/I4210122178","display_name":"Hewlett Packard Enterprise (United States)","ror":"https://ror.org/020x0c621","country_code":"US","type":"company","lineage":["https://openalex.org/I4210122178"]},{"id":"https://openalex.org/I4210163432","display_name":"Hewlett Packard Enterprise (Ireland)","ror":"https://ror.org/05cc0x492","country_code":"IE","type":"company","lineage":["https://openalex.org/I4210163432"]}],"countries":["DE","IE","US"],"is_corresponding":false,"raw_author_name":"Hartmut Schultze","raw_affiliation_strings":["Hewlett Packard Enterprise,Ratingen,Germany","Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"Hewlett Packard Enterprise,Ratingen,Germany","institution_ids":["https://openalex.org/I4210122178","https://openalex.org/I4210163432"]},{"raw_affiliation_string":"Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007372940","display_name":"Thomas Ulas","orcid":"https://orcid.org/0000-0002-9785-4197"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Ulas","raw_affiliation_strings":["LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036229014","display_name":"Sharad Singhal","orcid":"https://orcid.org/0000-0002-3650-7570"},"institutions":[{"id":"https://openalex.org/I1324840837","display_name":"Hewlett-Packard (United States)","ror":"https://ror.org/059rn9488","country_code":"US","type":"company","lineage":["https://openalex.org/I1324840837"]},{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Sharad Singhal","raw_affiliation_strings":["Hewlett Packard Labs,Palo Alto,USA","Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"Hewlett Packard Labs,Palo Alto,USA","institution_ids":["https://openalex.org/I1324840837"]},{"raw_affiliation_string":"Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073445890","display_name":"Joachim L. Schultze","orcid":"https://orcid.org/0000-0003-2812-9853"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Joachim L. Schultze","raw_affiliation_strings":["LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"LIMES Institute, University of Bonn,Genomics and Immunoregulation,Bonn,Germany","institution_ids":["https://openalex.org/I135140700"]},{"raw_affiliation_string":"Genomics and Immunoregulation, LIMES Institute, University of Bonn, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5063916697"],"corresponding_institution_ids":["https://openalex.org/I135140700","https://openalex.org/I2801533059","https://openalex.org/I87890613"],"apc_list":null,"apc_paid":null,"fwci":0.4294,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.63461338,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"1850","last_page":"1855"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9927999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7922021746635437},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.592719554901123},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.5859186053276062},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.5634023547172546},{"id":"https://openalex.org/keywords/data-processing","display_name":"Data processing","score":0.5344105958938599},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5159164667129517},{"id":"https://openalex.org/keywords/database-centric-architecture","display_name":"Database-centric architecture","score":0.4692257344722748},{"id":"https://openalex.org/keywords/energy-consumption","display_name":"Energy consumption","score":0.46113526821136475},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4564433693885803},{"id":"https://openalex.org/keywords/efficient-energy-use","display_name":"Efficient energy use","score":0.43713703751564026},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3598282039165497},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3324941098690033},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21291208267211914},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.1787796914577484},{"id":"https://openalex.org/keywords/software-architecture","display_name":"Software architecture","score":0.1760215163230896},{"id":"https://openalex.org/keywords/reference-architecture","display_name":"Reference architecture","score":0.1712760329246521},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.13288310170173645}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7922021746635437},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.592719554901123},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.5859186053276062},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.5634023547172546},{"id":"https://openalex.org/C138827492","wikidata":"https://www.wikidata.org/wiki/Q6661985","display_name":"Data processing","level":2,"score":0.5344105958938599},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5159164667129517},{"id":"https://openalex.org/C154240960","wikidata":"https://www.wikidata.org/wiki/Q2860294","display_name":"Database-centric architecture","level":5,"score":0.4692257344722748},{"id":"https://openalex.org/C2780165032","wikidata":"https://www.wikidata.org/wiki/Q16869822","display_name":"Energy consumption","level":2,"score":0.46113526821136475},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4564433693885803},{"id":"https://openalex.org/C2742236","wikidata":"https://www.wikidata.org/wiki/Q924713","display_name":"Efficient energy use","level":2,"score":0.43713703751564026},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3598282039165497},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3324941098690033},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21291208267211914},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.1787796914577484},{"id":"https://openalex.org/C35869016","wikidata":"https://www.wikidata.org/wiki/Q846636","display_name":"Software architecture","level":3,"score":0.1760215163230896},{"id":"https://openalex.org/C55356503","wikidata":"https://www.wikidata.org/wiki/Q2136675","display_name":"Reference architecture","level":4,"score":0.1712760329246521},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.13288310170173645},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm47256.2019.8983296","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983296","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:pub.dzne.de:164491","is_oa":false,"landing_page_url":"https://pub.dzne.de/search?p=id:%22DZNE-2022-01043%22","pdf_url":null,"source":{"id":"https://openalex.org/S7407051172","display_name":"DZNE Pub","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) : [Proceedings] - IEEE, 2019. - ISBN 978-1-7281-1867-3 - doi:10.1109/BIBM47256.2019.8983296<br/>2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), San Diego, CA, 2019-11-18 - 2019-11-21","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7","score":0.6399999856948853}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1958673254","https://openalex.org/W2007807048","https://openalex.org/W2074490119","https://openalex.org/W2104846587","https://openalex.org/W2117489143","https://openalex.org/W2201638556","https://openalex.org/W2323326409","https://openalex.org/W2331074879","https://openalex.org/W2513408092","https://openalex.org/W2597980747","https://openalex.org/W2611603562","https://openalex.org/W2715570888","https://openalex.org/W2752064279","https://openalex.org/W2784057214","https://openalex.org/W2785694006","https://openalex.org/W2921618608","https://openalex.org/W2952845679"],"related_works":["https://openalex.org/W4390608645","https://openalex.org/W4247566972","https://openalex.org/W4394895745","https://openalex.org/W2960264696","https://openalex.org/W3090563135","https://openalex.org/W2497432351","https://openalex.org/W2084395052","https://openalex.org/W2792375448","https://openalex.org/W3024941504","https://openalex.org/W2898899725"],"abstract_inverted_index":{"Next":[0],"generation":[1],"sequencing":[2],"(NGS)":[3],"is":[4,12,36,79],"the":[5,20,26,39,49,53,158,184],"driving":[6],"force":[7],"behind":[8],"precision":[9],"medicine":[10],"and":[11,48,130,153,178],"revolutionizing":[13],"most,":[14],"if":[15],"not":[16],"all,":[17],"areas":[18,212],"of":[19,33,45,125,198],"life":[21],"sciences.":[22],"Particularly":[23],"when":[24],"targeting":[25],"major":[27],"common":[28],"diseases,":[29],"an":[30,80],"exponential":[31],"growth":[32],"NGS":[34,46,94,175],"data":[35,47,54,95,150,163,176,180,201],"foreseen":[37],"for":[38,56,161],"next":[40],"decades.":[41],"This":[42],"enormous":[43],"increase":[44],"need":[50],"to":[51,60,83,183,202],"process":[52],"quickly":[55],"real-world":[57],"applications":[58],"requires":[59],"rethink":[61],"our":[62],"current":[63,84],"compute":[64,86,167,220],"infrastructures.":[65,87],"Here":[66],"we":[67,97],"provide":[68],"evidence":[69],"that":[70,209],"Memory-Driven":[71],"Computing":[72],"(MDC),":[73],"a":[74,105,165],"novel":[75],"memory-centric":[76,219],"hardware":[77],"architecture,":[78],"attractive":[81],"alternative":[82],"processor-centric":[85],"To":[88],"illustrate":[89],"how":[90],"MDC":[91,147],"can":[92,169],"change":[93],"handling,":[96],"used":[98],"RNA-seq":[99,115,138],"pseudoalignment":[100,111],"followed":[101],"by":[102,112,120,186],"quantification":[103,116],"as":[104],"first":[106],"example.":[107],"Even":[108],"more":[109,121],"impressive,":[110],"near-optimal":[113],"probabilistic":[114],"(kallisto)":[117],"was":[118],"accelerated":[119],"than":[122],"two":[123],"orders":[124],"magnitude":[126],"with":[127,157,191],"identical":[128],"accuracy":[129],"indicated":[131],"66%":[132],"reduced":[133],"energy":[134,154],"consumption.":[135,155],"One":[136],"billion":[137],"reads":[139],"were":[140],"processed":[141],"in":[142],"just":[143],"92":[144],"seconds.":[145],"Clearly,":[146],"simultaneously":[148],"reduces":[149],"processing":[151,177],"time":[152],"Together":[156],"MDC-inherent":[159],"solutions":[160],"local":[162,192],"privacy,":[164],"new":[166,218],"model":[168],"be":[170],"projected":[171],"pushing":[172],"large":[173,199],"scale":[174],"primary":[179],"analytics":[181],"closer":[182],"edge":[185],"directly":[187],"combining":[188],"high-end":[189],"sequencers":[190],"MDC,":[193],"thereby":[194],"also":[195],"reducing":[196],"movement":[197],"raw":[200],"central":[203],"cloud":[204],"storage.":[205],"We":[206],"further":[207],"envision":[208],"other":[210],"data-rich":[211],"will":[213],"similarly":[214],"benefit":[215],"from":[216],"this":[217],"architecture.":[221]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
