{"id":"https://openalex.org/W3005144188","doi":"https://doi.org/10.1109/bibm47256.2019.8983256","title":"Identifying functional evolution processes according to the pathological stages of colorectal cancer","display_name":"Identifying functional evolution processes according to the pathological stages of colorectal cancer","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W3005144188","doi":"https://doi.org/10.1109/bibm47256.2019.8983256","mag":"3005144188"},"language":"en","primary_location":{"id":"doi:10.1109/bibm47256.2019.8983256","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983256","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100748642","display_name":"Bolin Chen","orcid":"https://orcid.org/0000-0001-5507-2288"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bolin Chen","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University,Xi&#x0027;an,China","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University,Xi&#x0027;an,China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110865811","display_name":"Manting Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Manting Yang","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University,Xi&#x0027;an,China","School of Computer Science, Northwestern Polytechnical University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University,Xi&#x0027;an,China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006551076","display_name":"Li Gao","orcid":"https://orcid.org/0000-0001-5758-3516"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Gao","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University,Xi&#x0027;an,China","School of Computer Science, Northwestern Polytechnical University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University,Xi&#x0027;an,China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009944817","display_name":"Xuequn Shang","orcid":"https://orcid.org/0000-0002-7249-8210"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]},{"id":"https://openalex.org/I890469752","display_name":"Ministry of Industry and Information Technology","ror":"https://ror.org/0385nmy68","country_code":"CN","type":"government","lineage":["https://openalex.org/I890469752"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuequn Shang","raw_affiliation_strings":["Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University,Xi&#x0027;an,China","Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University,Xi&#x0027;an,China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"Key Laboratory of Big Data Storage and Management, Ministry of Industry and Information Technology, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100748642"],"corresponding_institution_ids":["https://openalex.org/I17145004","https://openalex.org/I890469752"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.18866074,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"193","last_page":"196"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13984","display_name":"Nutrition, Genetics, and Disease","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13984","display_name":"Nutrition, Genetics, and Disease","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9812999963760376,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11503","display_name":"Cytokine Signaling Pathways and Interactions","score":0.975600004196167,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pathological","display_name":"Pathological","score":0.6607462167739868},{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.6202849745750427},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.569774329662323},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4075496196746826},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3308010995388031},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.317281037569046},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.28311413526535034},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.12581521272659302}],"concepts":[{"id":"https://openalex.org/C207886595","wikidata":"https://www.wikidata.org/wiki/Q1456138","display_name":"Pathological","level":2,"score":0.6607462167739868},{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.6202849745750427},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.569774329662323},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4075496196746826},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3308010995388031},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.317281037569046},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.28311413526535034},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.12581521272659302}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm47256.2019.8983256","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983256","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8700000047683716,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1963823927","https://openalex.org/W1970378023","https://openalex.org/W1992127683","https://openalex.org/W2021058886","https://openalex.org/W2029567811","https://openalex.org/W2055595037","https://openalex.org/W2073121745","https://openalex.org/W2082565035","https://openalex.org/W2082831054","https://openalex.org/W2085653208","https://openalex.org/W2096173332","https://openalex.org/W2116634113","https://openalex.org/W2120758258","https://openalex.org/W2128919887","https://openalex.org/W2140683554","https://openalex.org/W2142249788","https://openalex.org/W2149225499","https://openalex.org/W2159675211","https://openalex.org/W2169589032","https://openalex.org/W2313506880","https://openalex.org/W2345126661","https://openalex.org/W2911188335","https://openalex.org/W2942796699"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W3031052312","https://openalex.org/W4389568370","https://openalex.org/W3032375762","https://openalex.org/W1995515455","https://openalex.org/W2080531066","https://openalex.org/W3108674512","https://openalex.org/W1506200166","https://openalex.org/W1489783725","https://openalex.org/W2148612803"],"abstract_inverted_index":{"Colorectal":[0],"cancer":[1,20,53],"(CRC)":[2],"is":[3,21],"one":[4],"of":[5,41,51,63,71,86,101,142,180,184,235,253],"the":[6,35,45,52,69,73,78,82,109,233],"malignant":[7],"tumors":[8],"with":[9],"high":[10],"morbidity":[11],"and":[12,30,76,120,126,147,170,188,193,201,215,222,250],"mortality.":[13],"A":[14,182,205],"prevalent":[15],"method":[16],"for":[17,177],"studying":[18],"colorectal":[19],"to":[22,80,96,104,114,246],"identify":[23,97,115],"differentially":[24],"expressed":[25],"genes":[26,159],"(DEGs)":[27],"between":[28,118,168],"control":[29,119],"patient":[31],"samples,":[32,128],"followed":[33],"by":[34,137,157,211],"pathway":[36,132],"enrichment":[37],"analyses.":[38],"However,":[39],"many":[40],"those":[42,64,213],"studies":[43],"ignore":[44],"fact":[46],"that":[47],"different":[48,57],"pathological":[49,106],"stages":[50,174,179],"are":[54],"often":[55],"highly":[56],"from":[58],"each":[59],"other.":[60],"The":[61,166,237],"mixture":[62],"heterogeneous":[65],"samples":[66],"may":[67,228],"lack":[68],"efficiency":[70],"identifying":[72],"real":[74],"DEGs,":[75],"loss":[77],"opportunity":[79],"analyze":[81],"dynamic":[83],"evolution":[84,99,207,218,251],"process":[85],"cancer.":[87],"In":[88],"this":[89,241],"study,":[90],"we":[91],"develop":[92],"a":[93,131,139,148,163],"feasible":[94],"framework":[95,238],"function":[98],"processes":[100,219,252],"cancers":[102],"according":[103],"their":[105],"stages.":[107],"Firstly,":[108],"limma":[110],"package":[111],"was":[112,135,153,175,209],"used":[113,245],"DEG":[116],"sets":[117],"CRC":[121],"stage":[122],"I,":[123],"II,":[124],"III,":[125],"IV":[127],"separately.":[129],"Secondly,":[130],"interaction":[133,151],"network":[134,152,208],"constructed":[136,210],"taking":[138],"comprehensive":[140],"analysis":[141],"pathways":[143,169],"at":[144],"individual":[145],"stages,":[146],"functional":[149,206],"module":[150],"also":[154],"generated":[155],"independently":[156],"clustering":[158],"into":[160],"modules":[161,171],"in":[162,172,197,232,240],"PPI":[164],"network.":[165],"relationship":[167],"adjacent":[173],"analyzed":[176],"all":[178],"CRC.":[181,236,254],"total":[183],"479,":[185],"313,":[186],"349,":[187],"383":[189],"DEGs":[190],"were":[191,195,225],"identified":[192,226],"they":[194],"enriched":[196],"17,":[198],"16,":[199],"20,":[200],"24":[202],"pathways,":[203],"respectively.":[204],"using":[212],"modules,":[214],"two":[216],"significant":[217],"a2-b1-c2-d1":[220],"(Mod1)":[221],"a1-b2-c1-d2":[223],"(Mod2)":[224],"which":[227],"play":[229],"critical":[230],"roles":[231],"development":[234],"proposed":[239],"study":[242],"can":[243],"be":[244],"explore":[247],"molecular":[248],"mechanisms":[249]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
