{"id":"https://openalex.org/W3004439510","doi":"https://doi.org/10.1109/bibm47256.2019.8983252","title":"Capsule Network for Predicting Zinc Binding Sites in Metalloproteins","display_name":"Capsule Network for Predicting Zinc Binding Sites in Metalloproteins","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W3004439510","doi":"https://doi.org/10.1109/bibm47256.2019.8983252","mag":"3004439510"},"language":"en","primary_location":{"id":"doi:10.1109/bibm47256.2019.8983252","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983252","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085188994","display_name":"Clement Essien","orcid":"https://orcid.org/0000-0003-1876-8889"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Clement Essien","raw_affiliation_strings":["Christopher S. Bond Life Sciences Center, University of Missouri,Department of Electrical Engineering and Computer Science,Columbia,MO,USA,65211","Department of Electrical Engineering and Computer Science, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Christopher S. Bond Life Sciences Center, University of Missouri,Department of Electrical Engineering and Computer Science,Columbia,MO,USA,65211","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003943520","display_name":"Duolin Wang","orcid":"https://orcid.org/0000-0003-1649-460X"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Duolin Wang","raw_affiliation_strings":["Christopher S. Bond Life Sciences Center, University of Missouri,Department of Electrical Engineering and Computer Science,Columbia,MO,USA,65211","Department of Electrical Engineering and Computer Science, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Christopher S. Bond Life Sciences Center, University of Missouri,Department of Electrical Engineering and Computer Science,Columbia,MO,USA,65211","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082428303","display_name":"Dong Xu","orcid":"https://orcid.org/0000-0002-4809-0514"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dong Xu","raw_affiliation_strings":["Christopher S. Bond Life Sciences Center, University of Missouri,Department of Electrical Engineering and Computer Science,Columbia,MO,USA,65211","Department of Electrical Engineering and Computer Science, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Christopher S. Bond Life Sciences Center, University of Missouri,Department of Electrical Engineering and Computer Science,Columbia,MO,USA,65211","institution_ids":["https://openalex.org/I76835614"]},{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA","institution_ids":["https://openalex.org/I76835614"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I76835614"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"2337","last_page":"2341"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10915","display_name":"Trace Elements in Health","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10915","display_name":"Trace Elements in Health","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9821000099182129,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metalloprotein","display_name":"Metalloprotein","score":0.7406474351882935},{"id":"https://openalex.org/keywords/zinc","display_name":"Zinc","score":0.6925414800643921},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6897184252738953},{"id":"https://openalex.org/keywords/zinc-finger","display_name":"Zinc finger","score":0.5647542476654053},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.531364917755127},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.510029137134552},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.4796786308288574},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4725986123085022},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.41547590494155884},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.39452919363975525},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38196176290512085},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34881389141082764},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.258023202419281},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20963504910469055},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.17021968960762024},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08675333857536316}],"concepts":[{"id":"https://openalex.org/C17165728","wikidata":"https://www.wikidata.org/wiki/Q423350","display_name":"Metalloprotein","level":3,"score":0.7406474351882935},{"id":"https://openalex.org/C535196362","wikidata":"https://www.wikidata.org/wiki/Q758","display_name":"Zinc","level":2,"score":0.6925414800643921},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6897184252738953},{"id":"https://openalex.org/C24284526","wikidata":"https://www.wikidata.org/wiki/Q204785","display_name":"Zinc finger","level":4,"score":0.5647542476654053},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.531364917755127},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.510029137134552},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.4796786308288574},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4725986123085022},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.41547590494155884},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.39452919363975525},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38196176290512085},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34881389141082764},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.258023202419281},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20963504910469055},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.17021968960762024},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08675333857536316},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm47256.2019.8983252","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983252","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1665214252","https://openalex.org/W1788100250","https://openalex.org/W1854339933","https://openalex.org/W1978298108","https://openalex.org/W1999402949","https://openalex.org/W2003859834","https://openalex.org/W2005697780","https://openalex.org/W2008708467","https://openalex.org/W2037263319","https://openalex.org/W2070571039","https://openalex.org/W2073798474","https://openalex.org/W2092836574","https://openalex.org/W2099207146","https://openalex.org/W2108211735","https://openalex.org/W2109681606","https://openalex.org/W2128934600","https://openalex.org/W2145144268","https://openalex.org/W2146788987","https://openalex.org/W2153026148","https://openalex.org/W2742750032","https://openalex.org/W2775784830","https://openalex.org/W2794821769","https://openalex.org/W2903682118","https://openalex.org/W2963703618","https://openalex.org/W2964121744","https://openalex.org/W6743446608"],"related_works":["https://openalex.org/W2067936761","https://openalex.org/W2417131764","https://openalex.org/W2070652985","https://openalex.org/W4233265360","https://openalex.org/W2085980434","https://openalex.org/W2170686685","https://openalex.org/W1969212998","https://openalex.org/W2016770061","https://openalex.org/W2037360899","https://openalex.org/W1982046979"],"abstract_inverted_index":{"Zinc":[0,19,39],"is":[1,34,82,127],"an":[2,22],"important":[3,23,35],"cofactor":[4],"for":[5,107,130],"various":[6],"biological":[7],"functions":[8,51],"in":[9,25,42,61,94],"plants":[10],"and":[11,50],"animals,":[12],"which":[13,29],"are":[14,64,74],"usually":[15],"associated":[16],"with":[17],"proteins.":[18,54],"also":[20],"plays":[21],"role":[24],"protein":[26],"structures":[27,49],"to":[28,36,45,86],"it":[30,33],"binds.":[31],"Hence,":[32],"predict":[37],"the":[38,48,57,88,104],"binding":[40,110],"sites":[41],"these":[43,53],"proteins":[44],"better":[46],"understand":[47],"of":[52,56,90],"Most":[55],"existing":[58],"tools":[59],"developed":[60],"this":[62,95],"domain":[63],"structure-based":[65],"predictors":[66],"implementing":[67],"Support":[68],"Vector":[69],"Machines":[70],"on":[71,103,115],"datasets":[72],"that":[73],"more":[75,116],"than":[76],"a":[77,100],"decade":[78],"old.":[79],"As":[80],"there":[81],"little":[83],"work":[84],"done":[85],"explore":[87],"use":[89],"deep":[91],"learning":[92],"frameworks":[93],"problem,":[96],"we":[97],"propose":[98],"ZinCaps,":[99],"framework":[101],"based":[102],"capsule":[105],"network":[106],"predicting":[108],"zinc":[109],"site":[111],"using":[112],"sequence-only":[113],"information":[114],"recently":[117],"compiled":[118],"datasets.":[119],"ZinCaps":[120],"outperforms":[121],"previous":[122],"tools.":[123],"Its":[124],"source":[125],"codes":[126],"freely":[128],"available":[129],"download":[131],"at":[132],"https://github.com/clemEssien/ActiveSitePrediction.":[133]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
