{"id":"https://openalex.org/W3005448126","doi":"https://doi.org/10.1109/bibm47256.2019.8983238","title":"CoPath: discovering cooperative driver pathways using greedy mutual exclusivity and bi-clustering","display_name":"CoPath: discovering cooperative driver pathways using greedy mutual exclusivity and bi-clustering","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W3005448126","doi":"https://doi.org/10.1109/bibm47256.2019.8983238","mag":"3005448126"},"language":"en","primary_location":{"id":"doi:10.1109/bibm47256.2019.8983238","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983238","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101501447","display_name":"Ziying Yang","orcid":"https://orcid.org/0000-0002-0370-958X"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziying Yang","raw_affiliation_strings":["College of Computer and Information Sciences, Southwest University,Chongqing,China","College of Computer and Information Sciences, Southwest University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Information Sciences, Southwest University,Chongqing,China","institution_ids":["https://openalex.org/I142108993"]},{"raw_affiliation_string":"College of Computer and Information Sciences, Southwest University, Chongqing, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027082940","display_name":"Guoxian Yu","orcid":"https://orcid.org/0000-0002-1667-6705"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guoxian Yu","raw_affiliation_strings":["College of Computer and Information Sciences, Southwest University,Chongqing,China","College of Computer and Information Sciences, Southwest University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Information Sciences, Southwest University,Chongqing,China","institution_ids":["https://openalex.org/I142108993"]},{"raw_affiliation_string":"College of Computer and Information Sciences, Southwest University, Chongqing, China","institution_ids":["https://openalex.org/I142108993"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101023772","display_name":"Jiantao Yu","orcid":"https://orcid.org/0000-0001-7134-9021"},"institutions":[{"id":"https://openalex.org/I4210088176","display_name":"North West Agriculture and Forestry University","ror":null,"country_code":"CN","type":null,"lineage":["https://openalex.org/I4210088176"]},{"id":"https://openalex.org/I89652312","display_name":"Northwest A&F University","ror":"https://ror.org/0051rme32","country_code":"CN","type":"education","lineage":["https://openalex.org/I89652312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiantao Yu","raw_affiliation_strings":["College of Information Engineering, North-West A&#x0026;F University,Xian,China","College of Information Engineering, North-West A&F University, Xian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Engineering, North-West A&#x0026;F University,Xian,China","institution_ids":["https://openalex.org/I4210088176"]},{"raw_affiliation_string":"College of Information Engineering, North-West A&F University, Xian, China","institution_ids":["https://openalex.org/I89652312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079800756","display_name":"Maozu Guo","orcid":"https://orcid.org/0000-0001-6228-6276"},"institutions":[{"id":"https://openalex.org/I62853816","display_name":"Beijing University of Civil Engineering and Architecture","ror":"https://ror.org/02yj0p855","country_code":"CN","type":"education","lineage":["https://openalex.org/I62853816"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Maozu Guo","raw_affiliation_strings":["School of Electrical and Information Engineering, Beijing University of Civil Engineering and Architecture,Beijing,China","School of Electrical and Information Engineering, Beijing University of Civil Engineering and Architecture, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical and Information Engineering, Beijing University of Civil Engineering and Architecture,Beijing,China","institution_ids":["https://openalex.org/I62853816"]},{"raw_affiliation_string":"School of Electrical and Information Engineering, Beijing University of Civil Engineering and Architecture, Beijing, China","institution_ids":["https://openalex.org/I62853816"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100384767","display_name":"Jun Wang","orcid":"https://orcid.org/0000-0002-5890-0365"},"institutions":[{"id":"https://openalex.org/I142108993","display_name":"Southwest University","ror":"https://ror.org/01kj4z117","country_code":"CN","type":"education","lineage":["https://openalex.org/I142108993"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Wang","raw_affiliation_strings":["College of Computer and Information Sciences, Southwest University,Chongqing,China","College of Computer and Information Sciences, Southwest University, Chongqing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer and Information Sciences, Southwest University,Chongqing,China","institution_ids":["https://openalex.org/I142108993"]},{"raw_affiliation_string":"College of Computer and Information Sciences, Southwest University, Chongqing, China","institution_ids":["https://openalex.org/I142108993"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.6734,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.86516044,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2019","issue":null,"first_page":"165","last_page":"170"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9882000088691711,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9498999714851379,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7263556718826294},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6624504327774048},{"id":"https://openalex.org/keywords/greedy-algorithm","display_name":"Greedy algorithm","score":0.5971902012825012},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23166701197624207},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.11394250392913818}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7263556718826294},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6624504327774048},{"id":"https://openalex.org/C51823790","wikidata":"https://www.wikidata.org/wiki/Q504353","display_name":"Greedy algorithm","level":2,"score":0.5971902012825012},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23166701197624207},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.11394250392913818}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm47256.2019.8983238","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983238","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"mag:3037857914","is_oa":false,"landing_page_url":"https://jglobal.jst.go.jp/en/detail?JGLOBAL_ID=202002243339673465","pdf_url":null,"source":{"id":"https://openalex.org/S4306512817","display_name":"IEEE Conference Proceedings","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"IEEE Conference Proceedings","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.550000011920929}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1908864745","https://openalex.org/W1974640858","https://openalex.org/W2011912935","https://openalex.org/W2012915718","https://openalex.org/W2025183726","https://openalex.org/W2042851051","https://openalex.org/W2044433401","https://openalex.org/W2105325784","https://openalex.org/W2116298046","https://openalex.org/W2116798163","https://openalex.org/W2117692326","https://openalex.org/W2121443461","https://openalex.org/W2122683221","https://openalex.org/W2122778851","https://openalex.org/W2125984976","https://openalex.org/W2126172213","https://openalex.org/W2135029798","https://openalex.org/W2138155367","https://openalex.org/W2141012957","https://openalex.org/W2141811925","https://openalex.org/W2163798887","https://openalex.org/W2164298117","https://openalex.org/W2164750538","https://openalex.org/W2164883038","https://openalex.org/W2165516140","https://openalex.org/W2168303063","https://openalex.org/W2169387435","https://openalex.org/W2169967008","https://openalex.org/W2606231487","https://openalex.org/W2611492308","https://openalex.org/W2915536738","https://openalex.org/W3143596294","https://openalex.org/W4249273120","https://openalex.org/W6680012447"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W3183948672","https://openalex.org/W3173606202","https://openalex.org/W3110381201","https://openalex.org/W2948807893","https://openalex.org/W2935909890","https://openalex.org/W2778153218","https://openalex.org/W2758277628","https://openalex.org/W2748952813","https://openalex.org/W1531601525"],"abstract_inverted_index":{"The":[0],"carcinogenesis":[1],"is":[2],"typically":[3],"involved":[4],"with":[5],"the":[6,47,78,96,113,118,150,153],"cooperations":[7],"of":[8,39,46,105],"multiple":[9],"pathways.":[10,75,159],"Therefore,":[11],"discovering":[12],"cooperative":[13,24,73,143,157],"driver":[14,25,36,74,158,178,187],"pathways":[15,179,190],"can":[16,29,173],"provide":[17],"more":[18,183],"precise":[19],"therapy":[20],"to":[21,50,71,100,141],"patients.":[22],"Existing":[23],"pathway":[26,51],"identification":[27],"methods":[28],"only":[30,175],"identify":[31,101],"few":[32],"(or":[33],"previously":[34],"well-known)":[35],"pathways,":[37],"because":[38],"noisy":[40],"or":[41,45],"single":[42],"type":[43],"knowledge,":[44,129],"insufficient":[48],"attention":[49],"cooperations.":[52],"To":[53],"address":[54],"these":[55],"problems,":[56],"we":[57],"develop":[58],"a":[59,92,132],"novel":[60],"approach":[61],"called":[62],"CoPath":[63,89,172],"that":[64,171],"leverages":[65],"genomic":[66],"alteration":[67],"profiles":[68,80],"and":[69,85,123,130,189],"bi-clustering":[70,135],"discover":[72],"Based":[76],"on":[77,95,137,162],"mutation":[79],"reconstructed":[81],"from":[82,168],"somatic":[83],"mutations":[84],"copy":[86],"number":[87],"variations,":[88],"firstly":[90],"uses":[91],"greedy":[93],"search":[94],"gene":[97,124,138],"signaling":[98],"network":[99,126],"mutually":[102,120,144],"exclusive":[103,121,145],"modules":[104,122,151],"genes,":[106],"which":[107],"have":[108],"common":[109],"downstream":[110],"events":[111],"in":[112,152],"network.":[114],"Next,":[115],"it":[116,148],"incorporates":[117],"identified":[119],"interaction":[125],"as":[127,156],"prior":[128],"introduces":[131],"dual":[133],"regularized":[134],"method":[136],"expression":[139],"data":[140],"cluster":[142,155],"modules.":[146],"Finally,":[147],"identifies":[149],"same":[154],"Extensive":[160],"experiments":[161],"real":[163],"cancer":[164],"genomics":[165],"dataset":[166],"(Breast":[167],"TCGA)":[169],"shows":[170],"not":[174],"detect":[176],"individual":[177],"but":[180],"also":[181],"uncover":[182],"relations":[184],"between":[185],"potential":[186],"genes":[188],"than":[191],"related":[192],"competitive":[193],"approaches.":[194]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
