{"id":"https://openalex.org/W3004428372","doi":"https://doi.org/10.1109/bibm47256.2019.8983200","title":"A Global Similarity Learning for Clustering of Single-Cell RNA-Seq Data","display_name":"A Global Similarity Learning for Clustering of Single-Cell RNA-Seq Data","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W3004428372","doi":"https://doi.org/10.1109/bibm47256.2019.8983200","mag":"3004428372"},"language":"en","primary_location":{"id":"doi:10.1109/bibm47256.2019.8983200","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983200","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5050334773","display_name":"Xiaoshu Zhu","orcid":"https://orcid.org/0000-0002-7696-9112"},"institutions":[{"id":"https://openalex.org/I27462735","display_name":"Yulin Normal University","ror":"https://ror.org/00445hv47","country_code":"CN","type":"education","lineage":["https://openalex.org/I27462735"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoshu Zhu","raw_affiliation_strings":["School of Computer Science and Engineering, Yulin Normal University,Yulin,P.R. China","School of Computer Science and Engineering, Yulin Normal University, Yulin, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Yulin Normal University,Yulin,P.R. China","institution_ids":["https://openalex.org/I27462735"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Yulin Normal University, Yulin, P.R. China","institution_ids":["https://openalex.org/I27462735"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102319731","display_name":"Lilu Guo","orcid":null},"institutions":[{"id":"https://openalex.org/I27462735","display_name":"Yulin Normal University","ror":"https://ror.org/00445hv47","country_code":"CN","type":"education","lineage":["https://openalex.org/I27462735"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lilu Guo","raw_affiliation_strings":["School of Computer Science and Engineering, Yulin Normal University,Yulin,P.R. China","School of Computer Science and Engineering, Yulin Normal University, Yulin, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Yulin Normal University,Yulin,P.R. China","institution_ids":["https://openalex.org/I27462735"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Yulin Normal University, Yulin, P.R. China","institution_ids":["https://openalex.org/I27462735"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038763794","display_name":"Yunpei Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunpei Xu","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University,Changsha,P.R. China","School of Computer Science and Engineering, Central South University, Changsha, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University,Changsha,P.R. China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, P.R. China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101819060","display_name":"Hong\u2010Dong Li","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong-Dong Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University,Changsha,P.R. China","School of Computer Science and Engineering, Central South University, Changsha, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University,Changsha,P.R. China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, P.R. China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088826157","display_name":"Xingyu Liao","orcid":"https://orcid.org/0000-0002-0061-1317"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingyu Liao","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University,Changsha,P.R. China","School of Computer Science and Engineering, Central South University, Changsha, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University,Changsha,P.R. China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, P.R. China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["University of Saskatchewan,Division of Biomedical Engineering,Department of Mechanical Engineering,Saskatoon,Canada","Department of Mechanical Engineering, Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Saskatchewan,Division of Biomedical Engineering,Department of Mechanical Engineering,Saskatoon,Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"Department of Mechanical Engineering, Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103182832","display_name":"Xiaoqing Peng","orcid":"https://orcid.org/0000-0002-4099-5183"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoqing Peng","raw_affiliation_strings":["School of Life Science, Central South University,Changsha,P.R. China","School of Life Science, Central South University, Changsha, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Science, Central South University,Changsha,P.R. China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Life Science, Central South University, Changsha, P.R. China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"2019","issue":null,"first_page":"261","last_page":"266"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9800999760627747,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9800999760627747,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7394146919250488},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.7170894742012024},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5838006138801575},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5701359510421753},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.5441173315048218},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46166661381721497},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.4507168233394623},{"id":"https://openalex.org/keywords/correlation-clustering","display_name":"Correlation clustering","score":0.42709219455718994},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.41128382086753845},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.31868410110473633}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7394146919250488},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.7170894742012024},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5838006138801575},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5701359510421753},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.5441173315048218},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46166661381721497},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.4507168233394623},{"id":"https://openalex.org/C94641424","wikidata":"https://www.wikidata.org/wiki/Q5172845","display_name":"Correlation clustering","level":3,"score":0.42709219455718994},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.41128382086753845},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.31868410110473633},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm47256.2019.8983200","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983200","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"mag:3184755537","is_oa":false,"landing_page_url":"https://jglobal.jst.go.jp/en/detail?JGLOBAL_ID=202002264572349674","pdf_url":null,"source":{"id":"https://openalex.org/S4306512817","display_name":"IEEE Conference Proceedings","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"IEEE Conference Proceedings","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.47999998927116394}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W1552434751","https://openalex.org/W1564354600","https://openalex.org/W1602702667","https://openalex.org/W1666901150","https://openalex.org/W1844800652","https://openalex.org/W1874466506","https://openalex.org/W1967489571","https://openalex.org/W1984883254","https://openalex.org/W2007439698","https://openalex.org/W2010653277","https://openalex.org/W2023887100","https://openalex.org/W2026417691","https://openalex.org/W2030017878","https://openalex.org/W2033072655","https://openalex.org/W2033403400","https://openalex.org/W2045317504","https://openalex.org/W2051658465","https://openalex.org/W2068881679","https://openalex.org/W2069089843","https://openalex.org/W2091788723","https://openalex.org/W2095293504","https://openalex.org/W2109890799","https://openalex.org/W2111882541","https://openalex.org/W2120205807","https://openalex.org/W2121690903","https://openalex.org/W2127048411","https://openalex.org/W2156483112","https://openalex.org/W2302476265","https://openalex.org/W2307567449","https://openalex.org/W2308998873","https://openalex.org/W2337733832","https://openalex.org/W2413268016","https://openalex.org/W2473258837","https://openalex.org/W2506377511","https://openalex.org/W2510746232","https://openalex.org/W2522945402","https://openalex.org/W2530976429","https://openalex.org/W2532206188","https://openalex.org/W2557334921","https://openalex.org/W2585665652","https://openalex.org/W2598326928","https://openalex.org/W2610509384","https://openalex.org/W2733002388","https://openalex.org/W2763574125","https://openalex.org/W2803731655","https://openalex.org/W2899545492","https://openalex.org/W2904829642","https://openalex.org/W2911725280","https://openalex.org/W2951434717","https://openalex.org/W2952382191","https://openalex.org/W2953251392","https://openalex.org/W2960557205","https://openalex.org/W2965931599","https://openalex.org/W3102641634","https://openalex.org/W4244030505","https://openalex.org/W6757465320"],"related_works":["https://openalex.org/W1999117613","https://openalex.org/W2040929534","https://openalex.org/W3022637481","https://openalex.org/W2393816671","https://openalex.org/W3120229345","https://openalex.org/W2111119584","https://openalex.org/W3144143113","https://openalex.org/W3039964395","https://openalex.org/W2804957450","https://openalex.org/W2357208913"],"abstract_inverted_index":{"Single-cell":[0],"RNA-seq":[1],"(scRNA-seq)":[2],"data":[3,218],"analysis":[4],"is":[5,32],"a":[6,68,77,98,107,130,208],"powerful":[7],"tool":[8],"for":[9,81],"biological":[10],"researches.":[11],"Similarity":[12],"plays":[13],"an":[14],"important":[15],"role":[16],"in":[17,67,224],"clustering":[18,152,156,177,216],"scRNA-seq":[19,141,176,181,217],"data.":[20],"Existing":[21],"similarity":[22,51,79,89,109,116,161,191,225],"measurements":[23,52,162],"are":[24],"mainly":[25],"based":[26,58],"on":[27,59,64,127,179,198],"local":[28],"distance":[29],"information":[30,94,223],"that":[31,187,205],"calculated":[33,111],"between":[34],"directly":[35],"connected":[36],"node":[37,124],"pairs,":[38],"or":[39],"shared":[40],"nearest":[41],"neighbours'":[42],"information,":[43],"without":[44,232],"considering":[45,220],"the":[46,60,122,140,147,151,167,213,221],"global":[47,69,88,93,108,222],"information.":[48,62],"Therefore,":[49],"these":[50,199],"may":[53],"be":[54,203],"not":[55],"very":[56],"accurate":[57],"insufficient":[61],"Based":[63,126],"multi-kernel":[65,85],"indices":[66],"feature":[70,100],"space":[71,101],"and":[72,86,106,174,193],"path-based":[73,87,115],"similarity,":[74],"we":[75,171],"proposed":[76],"new":[78,99,209],"measurement":[80],"single-cell":[82],"clustering,":[83],"called":[84],"(MPGS).":[90],"In":[91],"MPGS,":[92,150],"was":[95,118,136],"incorporated":[96],"by":[97,112,219],"from":[102],"Spearman":[103],"correlation":[104],"coefficient,":[105],"matrix":[110],"multi-kernel.":[113],"A":[114],"metric":[117],"designed":[119],"to":[120,138,211],"expand":[121],"relevant":[123],"range.":[125],"this":[128],"similaritiy,":[129],"modified":[131],"Louvain":[132],"community":[133],"detection":[134],"method":[135],"applied":[137],"cluster":[139],"data,":[142],"named":[143],"MPGS-Louvain.":[144],"To":[145,165],"validate":[146],"performance":[148,168,197],"of":[149,154,169,215],"performances":[153],"several":[155],"methods":[157,178],"combined":[158],"with":[159],"different":[160],"were":[163],"compared.":[164],"demonstrate":[166],"MPGS-Louvain,":[170],"compared":[172],"MPGS-Louvain":[173,194,227],"five":[175],"twenty":[180],"datasets.":[182,200],"The":[183],"experimental":[184],"results":[185],"showed":[186],"MPGS":[188,206],"outperformed":[189],"other":[190],"measurements,":[192],"achieved":[195],"better":[196],"It":[201],"can":[202],"observed":[204],"provided":[207],"insight":[210],"improve":[212],"accuracy":[214],"measurement.":[226],"automatically":[228],"detected":[229],"clusters":[230],"accurately":[231],"prior":[233],"knowledge.":[234]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
