{"id":"https://openalex.org/W3005005846","doi":"https://doi.org/10.1109/bibm47256.2019.8983188","title":"SCENARIO: Discovery of Similar Aspects for Gene Similarity Explanation from Gene Information Network","display_name":"SCENARIO: Discovery of Similar Aspects for Gene Similarity Explanation from Gene Information Network","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W3005005846","doi":"https://doi.org/10.1109/bibm47256.2019.8983188","mag":"3005005846"},"language":"en","primary_location":{"id":"doi:10.1109/bibm47256.2019.8983188","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983188","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100652603","display_name":"Yidan Zhang","orcid":"https://orcid.org/0000-0002-7589-530X"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yidan Zhang","raw_affiliation_strings":["School of Computer Science, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I4210125143","https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103153652","display_name":"Lei Duan","orcid":"https://orcid.org/0000-0001-7254-1832"},"institutions":[{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]},{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Duan","raw_affiliation_strings":["School of Computer Science, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I4210125143","https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024401909","display_name":"Huiru Zheng","orcid":"https://orcid.org/0000-0001-7648-8709"},"institutions":[{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Huiru Zheng","raw_affiliation_strings":["School of Computing, Ulster University, Northern Ireland, United Kingdom"],"affiliations":[{"raw_affiliation_string":"School of Computing, Ulster University, Northern Ireland, United Kingdom","institution_ids":["https://openalex.org/I138801177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042718871","display_name":"Jesse Li\u2010Ling","orcid":"https://orcid.org/0000-0003-1723-9088"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jesse Li-Ling","raw_affiliation_strings":["State Key Laboratory of Biotherapy, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Biotherapy, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101447794","display_name":"B. B. Hu","orcid":"https://orcid.org/0000-0003-1441-7504"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Hu","raw_affiliation_strings":["School of Computer Science, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I4210125143","https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059759995","display_name":"Ruiqi Qin","orcid":"https://orcid.org/0000-0003-0102-9588"},"institutions":[{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]},{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruiqi Qin","raw_affiliation_strings":["School of Computer Science, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I4210125143","https://openalex.org/I24185976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039550320","display_name":"Chengxin He","orcid":"https://orcid.org/0000-0003-3759-3914"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengxin He","raw_affiliation_strings":["School of Computer Science, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I4210125143","https://openalex.org/I24185976"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100652603"],"corresponding_institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210125143"],"apc_list":null,"apc_paid":null,"fwci":0.0852,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.48868735,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"4","issue":null,"first_page":"604","last_page":"609"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.7308419346809387},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6476210355758667},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5882106423377991},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.5727174282073975},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.5613531470298767},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5337705612182617},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5313494801521301},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.48480024933815},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.4600726068019867},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.43893691897392273},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.34682905673980713},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23188728094100952},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2248634397983551},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21579325199127197},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21448343992233276},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.10639101266860962},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.10237640142440796}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.7308419346809387},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6476210355758667},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5882106423377991},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5727174282073975},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.5613531470298767},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5337705612182617},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5313494801521301},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.48480024933815},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.4600726068019867},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43893691897392273},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.34682905673980713},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23188728094100952},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2248634397983551},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21579325199127197},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21448343992233276},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.10639101266860962},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.10237640142440796},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm47256.2019.8983188","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983188","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W103340358","https://openalex.org/W1510033442","https://openalex.org/W1647729745","https://openalex.org/W2049436815","https://openalex.org/W2052250375","https://openalex.org/W2055043387","https://openalex.org/W2089453789","https://openalex.org/W2089467986","https://openalex.org/W2095370181","https://openalex.org/W2099364528","https://openalex.org/W2100761975","https://openalex.org/W2108491719","https://openalex.org/W2117805756","https://openalex.org/W2128049108","https://openalex.org/W2141432425","https://openalex.org/W2144362290","https://openalex.org/W2146980885","https://openalex.org/W2341117915","https://openalex.org/W2426363820","https://openalex.org/W2528252910","https://openalex.org/W2756390185","https://openalex.org/W2767891136","https://openalex.org/W2780689002","https://openalex.org/W2901527454","https://openalex.org/W2915769855","https://openalex.org/W2940574427","https://openalex.org/W2950225692","https://openalex.org/W2974235162","https://openalex.org/W4236236547","https://openalex.org/W6630568173","https://openalex.org/W6636975626","https://openalex.org/W6677712588"],"related_works":["https://openalex.org/W2112835755","https://openalex.org/W4291951920","https://openalex.org/W2349674371","https://openalex.org/W2097495471","https://openalex.org/W2375480909","https://openalex.org/W1696545756","https://openalex.org/W2952827811","https://openalex.org/W2056202066","https://openalex.org/W2353314428","https://openalex.org/W4297427155"],"abstract_inverted_index":{"Gene":[0],"similarity":[1,72,96,109],"analysis":[2],"not":[3],"only":[4],"provides":[5],"information":[6,39,67,88,168],"on":[7,75,165],"understanding":[8],"the":[9,20,30,56,63,76,82,86,92,95,108,112,121,127,134,166],"biological":[10],"roles":[11],"and":[12,90,184],"functions":[13],"of":[14,33,45,65,78,94,97,117,137],"a":[15,43,71,98,102,130,138,151],"gene,":[16],"but":[17],"also":[18],"reveals":[19],"relationships":[21],"among":[22],"different":[23],"genes.":[24],"In":[25,146],"this":[26,147],"paper,":[27,148],"we":[28,47,149],"identify":[29],"novel":[31,152],"idea":[32],"mining":[34],"similar":[35,61,131,135,160],"aspects":[36,53,136],"from":[37,62,144,171],"gene":[38,66,87,99,123,140,167],"network,":[40,89,169],"i.e.,":[41],"given":[42],"pair":[44,100,124,141],"genes,":[46],"want":[48],"to":[49,106,157],"know,":[50],"in":[51,85,101,111],"which":[52],"(meta":[54],"paths)":[55],"two":[57],"genes":[58,84],"are":[59],"mostly":[60],"perspective":[64],"network?":[68],"We":[69],"define":[70],"metric":[73],"based":[74],"set":[77,105,116],"meta":[79,103,118],"paths":[80,119],"connecting":[81],"query":[83,122,139],"use":[91],"rank":[93],"path":[104],"measure":[107],"significance":[110],"aspect.":[113,132],"A":[114],"minimal":[115,159],"where":[120],"is":[125,129,142,181],"ranked":[126],"best":[128],"Computing":[133],"far":[143],"trivial.":[145],"propose":[150],"heuristic":[153],"based-mining":[154],"method,":[155],"SCENARIO,":[156],"investigate":[158],"aspects.":[161],"Our":[162],"empirical":[163],"study":[164],"constructed":[170],"seven":[172],"public":[173],"gene-related":[174],"databases,":[175],"verified":[176],"that":[177],"our":[178],"proposed":[179],"method":[180],"effective,":[182],"efficient,":[183],"useful.":[185]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
