{"id":"https://openalex.org/W2981981288","doi":"https://doi.org/10.1109/bibm47256.2019.8983100","title":"Generation of digital patients for the simulation of tuberculosis with UISS-TB","display_name":"Generation of digital patients for the simulation of tuberculosis with UISS-TB","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W2981981288","doi":"https://doi.org/10.1109/bibm47256.2019.8983100","mag":"2981981288"},"language":"en","primary_location":{"id":"doi:10.1109/bibm47256.2019.8983100","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983100","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1910.12293","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003874484","display_name":"Marzio Pennisi","orcid":"https://orcid.org/0000-0003-0231-7653"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB","IT"],"is_corresponding":false,"raw_author_name":"Marzio Pennisi","raw_affiliation_strings":["University of Catania,Department of Mathematics and Computer Science,Catania,Italy","University of Sheffield#N#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Catania,Department of Mathematics and Computer Science,Catania,Italy","institution_ids":["https://openalex.org/I39063666"]},{"raw_affiliation_string":"University of Sheffield#N#","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063808404","display_name":"Miguel A. Ju\u00e1rez","orcid":"https://orcid.org/0000-0002-5128-0976"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]},{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB","IT"],"is_corresponding":false,"raw_author_name":"Miguel A. Ju\u00e1rez","raw_affiliation_strings":["School of Mathematics and Statistics, University of Sheffield,Sheffield,UK,S3 7RH","University of Catania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Mathematics and Statistics, University of Sheffield,Sheffield,UK,S3 7RH","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"University of Catania","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004880055","display_name":"Giulia Russo","orcid":"https://orcid.org/0000-0001-6616-7856"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giulia Russo","raw_affiliation_strings":["University of Catania,Department of Drug Sciences,Catania,Italy","University of Catania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Catania,Department of Drug Sciences,Catania,Italy","institution_ids":["https://openalex.org/I39063666"]},{"raw_affiliation_string":"University of Catania","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086585880","display_name":"Marco Viceconti","orcid":"https://orcid.org/0000-0002-2293-1530"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]},{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Viceconti","raw_affiliation_strings":["University of Bologna,Department of Industrial Engineering,Bologna,Italy","University of Catania"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Bologna,Department of Industrial Engineering,Bologna,Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"University of Catania","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044340074","display_name":"Francesco Pappalardo","orcid":"https://orcid.org/0000-0003-1668-3320"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]},{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesco Pappalardo","raw_affiliation_strings":["University of Catania,Department of Drug Sciences,Catania,Italy","University of Bologna"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Catania,Department of Drug Sciences,Catania,Italy","institution_ids":["https://openalex.org/I39063666"]},{"raw_affiliation_string":"University of Bologna","institution_ids":["https://openalex.org/I9360294"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.6734,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.85278212,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"2163","last_page":"2167"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.944599986076355,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9010000228881836,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/clinical-trial","display_name":"Clinical trial","score":0.5828045606613159},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5529447793960571},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5101752281188965},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.4764278829097748},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.43338465690612793},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4211488664150238},{"id":"https://openalex.org/keywords/tuberculosis","display_name":"Tuberculosis","score":0.4200405478477478},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3174215257167816},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.14864638447761536},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1372562050819397},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12214392423629761},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1076885461807251}],"concepts":[{"id":"https://openalex.org/C535046627","wikidata":"https://www.wikidata.org/wiki/Q30612","display_name":"Clinical trial","level":2,"score":0.5828045606613159},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5529447793960571},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5101752281188965},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.4764278829097748},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.43338465690612793},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4211488664150238},{"id":"https://openalex.org/C2781069245","wikidata":"https://www.wikidata.org/wiki/Q12204","display_name":"Tuberculosis","level":2,"score":0.4200405478477478},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3174215257167816},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.14864638447761536},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1372562050819397},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12214392423629761},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1076885461807251},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1109/bibm47256.2019.8983100","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983100","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:eprints.whiterose.ac.uk:213564","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Proceedings Paper"},{"id":"pmh:oai:arXiv.org:1910.12293","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1910.12293","pdf_url":"https://arxiv.org/pdf/1910.12293","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"mag:2981981288","is_oa":true,"landing_page_url":"https://arxiv.org/pdf/1910.12293v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.1910.12293","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1910.12293","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1910.12293","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1910.12293","pdf_url":"https://arxiv.org/pdf/1910.12293","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6200000047683716}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1771999207","https://openalex.org/W2043514557","https://openalex.org/W2102439908","https://openalex.org/W2110518406","https://openalex.org/W2118037724","https://openalex.org/W2139745270","https://openalex.org/W2147763277","https://openalex.org/W2158327192","https://openalex.org/W2346839593","https://openalex.org/W2365316759","https://openalex.org/W2779931721","https://openalex.org/W2911407484","https://openalex.org/W2994705677"],"related_works":["https://openalex.org/W3005110582","https://openalex.org/W2800452589","https://openalex.org/W3136539405","https://openalex.org/W2906797579","https://openalex.org/W3041058744","https://openalex.org/W2101030885","https://openalex.org/W2056746548","https://openalex.org/W2945057308","https://openalex.org/W2911699061","https://openalex.org/W3207725591","https://openalex.org/W3126203137","https://openalex.org/W3184412451","https://openalex.org/W2913823040","https://openalex.org/W2899765529","https://openalex.org/W2981683190","https://openalex.org/W3198728478","https://openalex.org/W2568292281","https://openalex.org/W2183692186","https://openalex.org/W3194445373","https://openalex.org/W1683633034"],"abstract_inverted_index":{"EC":[0],"funded":[1],"STriTuVaD":[2],"project":[3],"aims":[4],"to":[5,32,41,54,57,65,71,74,121,125,134,189],"test,":[6],"through":[7,154],"a":[8,82,91,123,165,173],"phase":[9],"IIb":[10],"clinical":[11,39,86],"trial,":[12,40,53],"two":[13],"of":[14,37,105,111,115,129,145,147,158,172,175,196],"the":[15,27,47,52,66,75,103,116,130,143,155,156,159,170,186,191,194,197],"most":[16,117],"advanced":[17],"therapeutic":[18],"vaccines":[19],"against":[20,46],"tuberculosis.":[21],"In":[22],"parallel,":[23],"we":[24],"have":[25,133],"extended":[26],"Universal":[28],"Immune":[29],"System":[30],"Simulator":[31],"include":[33],"all":[34],"relevant":[35],"determinants":[36],"such":[38],"establish":[42],"its":[43],"predictive":[44],"accuracy":[45],"individual":[48],"patients":[49,60,80],"recruited":[50],"in":[51,84,107,164],"use":[55],"it":[56],"generate":[58],"digital":[59,148,187],"and":[61,70,168,181,193],"predict":[62],"their":[63],"response":[64],"HRT":[67],"being":[68],"tested,":[69],"combine":[72],"them":[73],"observations":[76],"made":[77],"on":[78],"physical":[79],"using":[81],"new":[83],"silico-augmented":[85],"trial":[87],"approach":[88],"that":[89,132,177,184],"uses":[90],"Bayesian":[92],"adaptive":[93],"design.":[94],"This":[95,150],"approach,":[96],"where":[97],"found":[98],"effective":[99],"could":[100],"drastically":[101],"reduce":[102],"cost":[104],"innovation":[106],"this":[108],"critical":[109],"sector":[110],"public":[112],"healthcare.":[113],"One":[114],"challenging":[118],"task":[119],"is":[120],"develop":[122],"methodology":[124],"reproduce":[126,190],"biological":[127,180],"diversity":[128],"subjects":[131],"be":[135],"simulated,":[136],"i.e.,":[137],"provide":[138],"an":[139],"appropriate":[140],"strategy":[141],"for":[142],"generation":[144],"libraries":[146],"patients.":[149],"has":[151],"been":[152],"achieved":[153],"creation":[157],"initial":[160],"immune":[161],"system":[162],"repertoire":[163],"stochastic":[166],"way,":[167],"though":[169],"identification":[171],"\u201cvector":[174],"features\u201d":[176],"combines":[178],"both":[179],"pathophysiological":[182],"parameters":[183],"personalize":[185],"patient":[188],"physiology":[192],"pathophysiology":[195],"subject.":[198]},"counts_by_year":[{"year":2022,"cited_by_count":2}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
