{"id":"https://openalex.org/W3004604034","doi":"https://doi.org/10.1109/bibm47256.2019.8983083","title":"Computational Methods for scRNA-seq Analysis at Cell Level","display_name":"Computational Methods for scRNA-seq Analysis at Cell Level","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W3004604034","doi":"https://doi.org/10.1109/bibm47256.2019.8983083","mag":"3004604034"},"language":"en","primary_location":{"id":"doi:10.1109/bibm47256.2019.8983083","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983083","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047617047","display_name":"Tinghao Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]},{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Tinghao Zhu","raw_affiliation_strings":["College of Computer Science, Sichuan University,Chengdu,China","College of Computer Science, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science, Sichuan University,Chengdu,China","institution_ids":["https://openalex.org/I4210125143","https://openalex.org/I24185976"]},{"raw_affiliation_string":"College of Computer Science, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I4210125143","https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102714787","display_name":"Jinfei Zhou","orcid":"https://orcid.org/0000-0002-1400-5641"},"institutions":[{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]},{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinfei Zhou","raw_affiliation_strings":["College of Computer Science, Sichuan University,Chengdu,China","College of Computer Science, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science, Sichuan University,Chengdu,China","institution_ids":["https://openalex.org/I4210125143","https://openalex.org/I24185976"]},{"raw_affiliation_string":"College of Computer Science, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I4210125143","https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100350625","display_name":"Le Zhang","orcid":"https://orcid.org/0000-0002-3708-1727"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Le Zhang","raw_affiliation_strings":["College of Computer Science, Sichuan University,Chengdu,China","College of Computer Science, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science, Sichuan University,Chengdu,China","institution_ids":["https://openalex.org/I4210125143","https://openalex.org/I24185976"]},{"raw_affiliation_string":"College of Computer Science, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I4210125143","https://openalex.org/I24185976"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045938742","display_name":"Yang Cao","orcid":"https://orcid.org/0000-0002-1925-2123"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]},{"id":"https://openalex.org/I4210125143","display_name":"Chengdu University","ror":"https://ror.org/034z67559","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210125143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Cao","raw_affiliation_strings":["College of Life Sciences, Sichuan University,Chengdu,China","College of Life Sciences, Sichuan University, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"College of Life Sciences, Sichuan University,Chengdu,China","institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210125143"]},{"raw_affiliation_string":"College of Life Sciences, Sichuan University, Chengdu, China","institution_ids":["https://openalex.org/I24185976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5047617047"],"corresponding_institution_ids":["https://openalex.org/I24185976","https://openalex.org/I4210125143"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13813482,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1168","last_page":"1173"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10773","display_name":"Extracellular vesicles in disease","score":0.9575999975204468,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.953000009059906,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.7404589056968689},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.725441575050354},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6860427260398865},{"id":"https://openalex.org/keywords/trajectory","display_name":"Trajectory","score":0.5429685711860657},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4205205738544464},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4033508896827698},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3758881390094757},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3707340955734253},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06825914978981018}],"concepts":[{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.7404589056968689},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.725441575050354},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6860427260398865},{"id":"https://openalex.org/C13662910","wikidata":"https://www.wikidata.org/wiki/Q193139","display_name":"Trajectory","level":2,"score":0.5429685711860657},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4205205738544464},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4033508896827698},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3758881390094757},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3707340955734253},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06825914978981018},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm47256.2019.8983083","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8983083","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":62,"referenced_works":["https://openalex.org/W1559814459","https://openalex.org/W1631320694","https://openalex.org/W1813068103","https://openalex.org/W1984883254","https://openalex.org/W1993287310","https://openalex.org/W1995424704","https://openalex.org/W2035330928","https://openalex.org/W2053186076","https://openalex.org/W2073256527","https://openalex.org/W2128120736","https://openalex.org/W2134089414","https://openalex.org/W2135937351","https://openalex.org/W2152692691","https://openalex.org/W2154986869","https://openalex.org/W2164781545","https://openalex.org/W2187089797","https://openalex.org/W2240255230","https://openalex.org/W2306630387","https://openalex.org/W2344887288","https://openalex.org/W2422879816","https://openalex.org/W2430994085","https://openalex.org/W2509957998","https://openalex.org/W2511896561","https://openalex.org/W2519132385","https://openalex.org/W2560326406","https://openalex.org/W2598326928","https://openalex.org/W2602582876","https://openalex.org/W2615816755","https://openalex.org/W2617164779","https://openalex.org/W2645631144","https://openalex.org/W2725490158","https://openalex.org/W2747877289","https://openalex.org/W2752941699","https://openalex.org/W2767394894","https://openalex.org/W2789661952","https://openalex.org/W2796325895","https://openalex.org/W2799523883","https://openalex.org/W2800392236","https://openalex.org/W2801820889","https://openalex.org/W2809310576","https://openalex.org/W2811512420","https://openalex.org/W2883520937","https://openalex.org/W2890400107","https://openalex.org/W2901812360","https://openalex.org/W2907783748","https://openalex.org/W2911032314","https://openalex.org/W2913947277","https://openalex.org/W2925075625","https://openalex.org/W2927507212","https://openalex.org/W2941910667","https://openalex.org/W2942767520","https://openalex.org/W2949471597","https://openalex.org/W2950030509","https://openalex.org/W2950372712","https://openalex.org/W2951249671","https://openalex.org/W2999857418","https://openalex.org/W3005286632","https://openalex.org/W3011486364","https://openalex.org/W3167407435","https://openalex.org/W6679849079","https://openalex.org/W6744097767","https://openalex.org/W6929374308"],"related_works":["https://openalex.org/W4323768008","https://openalex.org/W1941703695","https://openalex.org/W4248382324","https://openalex.org/W3131574667","https://openalex.org/W4360995134","https://openalex.org/W3023605104","https://openalex.org/W2039473718","https://openalex.org/W2387529410","https://openalex.org/W2383578611","https://openalex.org/W2987583674"],"abstract_inverted_index":{"The":[0],"remarkable":[1],"progress":[2],"in":[3,8,33],"single-cell":[4],"RNA":[5],"sequencing":[6],"(scRNA-seq)":[7],"recent":[9],"years":[10],"has":[11],"led":[12],"to":[13],"the":[14,57,62],"heat":[15],"of":[16,19],"great":[17],"development":[18],"computational":[20],"methods":[21,51],"and":[22,41,47,52,59,67],"tools":[23],"for":[24,70],"scRNA-seq":[25,73],"data":[26,34,63],"analysis.":[27],"They":[28],"have":[29],"seen":[30],"wide":[31],"applications":[32],"preprocessing,":[35,64],"discovering":[36],"differential":[37],"expression,":[38],"cell":[39,65],"grouping,":[40,66],"trajectory":[42,68],"inference,":[43],"etc.":[44],"To":[45],"summarize":[46],"compare":[48],"these":[49],"diverse":[50],"tools,":[53],"this":[54],"paper":[55],"reviews":[56],"algorithms":[58],"software":[60],"including":[61],"inference":[69],"conducting":[71],"cell-level":[72],"studies.":[74]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
