{"id":"https://openalex.org/W3004801523","doi":"https://doi.org/10.1109/bibm47256.2019.8982960","title":"Cancer Biomarker Discovery from Gene Co-expression Networks Using Community Detection Methods","display_name":"Cancer Biomarker Discovery from Gene Co-expression Networks Using Community Detection Methods","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W3004801523","doi":"https://doi.org/10.1109/bibm47256.2019.8982960","mag":"3004801523"},"language":"en","primary_location":{"id":"doi:10.1109/bibm47256.2019.8982960","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8982960","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058935787","display_name":"Raihanul Bari Tanvir","orcid":null},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Raihanul Bari Tanvir","raw_affiliation_strings":["School of Computing and Information Sciences, Florida International University,Miami,FL,USA","School of Computing and Information Sciences, Florida International University, Miami, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing and Information Sciences, Florida International University,Miami,FL,USA","institution_ids":["https://openalex.org/I19700959"]},{"raw_affiliation_string":"School of Computing and Information Sciences, Florida International University, Miami, FL, USA","institution_ids":["https://openalex.org/I19700959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045295085","display_name":"Ananda Mohan Mondal","orcid":"https://orcid.org/0000-0002-4005-9942"},"institutions":[{"id":"https://openalex.org/I19700959","display_name":"Florida International University","ror":"https://ror.org/02gz6gg07","country_code":"US","type":"education","lineage":["https://openalex.org/I19700959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ananda Mohan Mondal","raw_affiliation_strings":["School of Computing and Information Sciences, Florida International University,Miami,FL,USA","School of Computing and Information Sciences, Florida International University, Miami, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing and Information Sciences, Florida International University,Miami,FL,USA","institution_ids":["https://openalex.org/I19700959"]},{"raw_affiliation_string":"School of Computing and Information Sciences, Florida International University, Miami, FL, USA","institution_ids":["https://openalex.org/I19700959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I19700959"],"apc_list":null,"apc_paid":null,"fwci":0.1657,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.53032394,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"2097","last_page":"2104"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.6252238154411316},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.6063898801803589},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.6033926606178284},{"id":"https://openalex.org/keywords/gene-co-expression-network","display_name":"Gene co-expression network","score":0.552807092666626},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5326665639877319},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5148783922195435},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.4889777898788452},{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.4455389678478241},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.4434434175491333},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.425913006067276},{"id":"https://openalex.org/keywords/oncology","display_name":"Oncology","score":0.3738568425178528},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3625931143760681},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24415069818496704},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2435171902179718},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.09229224920272827}],"concepts":[{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6252238154411316},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.6063898801803589},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.6033926606178284},{"id":"https://openalex.org/C2778022302","wikidata":"https://www.wikidata.org/wiki/Q18207329","display_name":"Gene co-expression network","level":5,"score":0.552807092666626},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5326665639877319},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5148783922195435},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.4889777898788452},{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.4455389678478241},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.4434434175491333},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.425913006067276},{"id":"https://openalex.org/C143998085","wikidata":"https://www.wikidata.org/wiki/Q162555","display_name":"Oncology","level":1,"score":0.3738568425178528},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3625931143760681},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24415069818496704},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2435171902179718},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.09229224920272827},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm47256.2019.8982960","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8982960","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5299999713897705,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1659336119","https://openalex.org/W1852477400","https://openalex.org/W1979438759","https://openalex.org/W1982813673","https://openalex.org/W1988263223","https://openalex.org/W2001071421","https://openalex.org/W2015953751","https://openalex.org/W2034784092","https://openalex.org/W2047940964","https://openalex.org/W2060705109","https://openalex.org/W2065176792","https://openalex.org/W2078149659","https://openalex.org/W2087873960","https://openalex.org/W2089306171","https://openalex.org/W2094397139","https://openalex.org/W2110042475","https://openalex.org/W2112811019","https://openalex.org/W2116961371","https://openalex.org/W2117692326","https://openalex.org/W2118886215","https://openalex.org/W2121040919","https://openalex.org/W2125129404","https://openalex.org/W2125510350","https://openalex.org/W2129997546","https://openalex.org/W2131681506","https://openalex.org/W2132022337","https://openalex.org/W2132202037","https://openalex.org/W2133241531","https://openalex.org/W2137009853","https://openalex.org/W2142720308","https://openalex.org/W2145955247","https://openalex.org/W2146060062","https://openalex.org/W2147339185","https://openalex.org/W2150041912","https://openalex.org/W2150926065","https://openalex.org/W2151178994","https://openalex.org/W2156247618","https://openalex.org/W2158948118","https://openalex.org/W2159767718","https://openalex.org/W2161174387","https://openalex.org/W2168346701","https://openalex.org/W2171115585","https://openalex.org/W2201162148","https://openalex.org/W2294639133","https://openalex.org/W2605849493","https://openalex.org/W2613557970","https://openalex.org/W2619272684","https://openalex.org/W2747121848","https://openalex.org/W2767377392","https://openalex.org/W2896647249","https://openalex.org/W2901454839","https://openalex.org/W2912892767","https://openalex.org/W2914032782","https://openalex.org/W2916952466","https://openalex.org/W2918402879","https://openalex.org/W2922454355","https://openalex.org/W2941728919","https://openalex.org/W2942369723","https://openalex.org/W2952289102","https://openalex.org/W2972707277","https://openalex.org/W3004873714","https://openalex.org/W3099768174","https://openalex.org/W6608852248","https://openalex.org/W6679191575","https://openalex.org/W7002359863"],"related_works":["https://openalex.org/W112583468","https://openalex.org/W96119380","https://openalex.org/W3023706879","https://openalex.org/W4298030740","https://openalex.org/W2108949684","https://openalex.org/W1965976436","https://openalex.org/W2012655824","https://openalex.org/W3177170977","https://openalex.org/W2326771431","https://openalex.org/W99488802"],"abstract_inverted_index":{"Finding":[0],"the":[1,7,23,44,47,53,134,159,171,185],"network":[2,190],"biomarkers":[3,18,191],"of":[4,9,25,28,57,76,155],"cancers":[5,78,157],"and":[6,67,87,176],"analysis":[8,149],"cancer":[10,58,65,172,182],"driving":[11],"genes":[12,29,162],"that":[13,46,136,168],"are":[14,19,33,98,113,137,179,192],"involved":[15],"in":[16,30,52,139],"these":[17,116],"essential":[20],"for":[21],"understanding":[22],"dynamics":[24],"cancer.":[26],"Clusters":[27],"co-expression":[31,55,103],"networks":[32,56,104,117],"commonly":[34],"known":[35],"as":[36,163,181],"functional":[37,62],"units.":[38],"This":[39],"work":[40],"is":[41,129,150],"based":[42],"on":[43,115,152],"hypothesis":[45],"dense":[48],"clusters":[49],"or":[50,123],"communities":[51,120,135,167],"gene":[54,73,102],"patients":[59,173],"may":[60],"represent":[61],"units":[63],"regarding":[64],"initiation":[66],"progression.":[68],"In":[69,184],"this":[70],"study,":[71,187],"RNA-seq":[72],"expression":[74],"data":[75,154],"three":[77,156],"-":[79,91],"Breast":[80],"Invasive":[81],"Carcinoma":[82],"(BRCA),":[83],"Colorectal":[84],"Adenocarcinoma":[85],"(COAD)":[86],"Glioblastoma":[88],"Multiforme":[89],"(GBM)":[90],"from":[92],"The":[93,166],"Cancer":[94],"Genome":[95],"Atlas":[96],"(TCGA)":[97],"used":[99],"to":[100,118,131],"construct":[101],"using":[105,158],"Pearson":[106],"Correlation.":[107],"Six":[108],"well-known":[109],"community":[110,161],"detection":[111],"algorithms":[112],"applied":[114],"identify":[119],"with":[121],"five":[122],"more":[124],"genes.":[125],"A":[126],"permutation":[127],"test":[128],"performed":[130,151],"further":[132],"mine":[133],"conserved":[138,145,160],"other":[140],"cancers,":[141],"thus":[142],"calling":[143],"them":[144],"communities.":[146],"Then":[147],"survival":[148],"clinical":[153],"prognostic":[164],"co-variates.":[165],"could":[169],"distinguish":[170],"between":[174],"high-":[175],"low-risk":[177],"groups":[178],"considered":[180],"biomarkers.":[183],"present":[186],"16":[188],"such":[189],"discovered.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
