{"id":"https://openalex.org/W3005169197","doi":"https://doi.org/10.1109/bibm47256.2019.8982929","title":"Predicting Disease Genes Using Connectivity and Functional Features","display_name":"Predicting Disease Genes Using Connectivity and Functional Features","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W3005169197","doi":"https://doi.org/10.1109/bibm47256.2019.8982929","mag":"3005169197"},"language":"en","primary_location":{"id":"doi:10.1109/bibm47256.2019.8982929","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8982929","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053966749","display_name":"Lorenzo Madeddu","orcid":"https://orcid.org/0000-0002-5702-8691"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Lorenzo Madeddu","raw_affiliation_strings":["Sapienza University of Rome,Translational and Precision Medicine Department,Rome,Italy","Translational and Precision Medicine Department, Sapienza University of Rome, Rome, Italy"],"affiliations":[{"raw_affiliation_string":"Sapienza University of Rome,Translational and Precision Medicine Department,Rome,Italy","institution_ids":["https://openalex.org/I861853513"]},{"raw_affiliation_string":"Translational and Precision Medicine Department, Sapienza University of Rome, Rome, Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036321638","display_name":"Giovanni Stilo","orcid":"https://orcid.org/0000-0002-2092-0213"},"institutions":[{"id":"https://openalex.org/I26415053","display_name":"University of L'Aquila","ror":"https://ror.org/01j9p1r26","country_code":"IT","type":"education","lineage":["https://openalex.org/I26415053"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giovanni Stilo","raw_affiliation_strings":["University of L&#x0027;Aquila,Computer Science Department,L&#x0027;Aquila,Italy","Computer Science Department, University of L'Aquila, L'Aquila, Italy"],"affiliations":[{"raw_affiliation_string":"University of L&#x0027;Aquila,Computer Science Department,L&#x0027;Aquila,Italy","institution_ids":["https://openalex.org/I26415053"]},{"raw_affiliation_string":"Computer Science Department, University of L'Aquila, L'Aquila, Italy","institution_ids":["https://openalex.org/I26415053"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070270772","display_name":"Paola Velardi","orcid":"https://orcid.org/0000-0003-0884-1499"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Paola Velardi","raw_affiliation_strings":["Sapienza information-based Technology InnovaTion Center for Health - STITCH"],"affiliations":[{"raw_affiliation_string":"Sapienza information-based Technology InnovaTion Center for Health - STITCH","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5053966749"],"corresponding_institution_ids":["https://openalex.org/I861853513"],"apc_list":null,"apc_paid":null,"fwci":0.0859,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.49720562,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"458","last_page":"465"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interactome","display_name":"Interactome","score":0.9265016317367554},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6200295686721802},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.592118501663208},{"id":"https://openalex.org/keywords/random-walk","display_name":"Random walk","score":0.548616349697113},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.46780040860176086},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43209707736968994},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41270652413368225},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.38228940963745117},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3618984520435333},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.26549386978149414},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20914360880851746},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20637312531471252},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1444355845451355},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.10803452134132385}],"concepts":[{"id":"https://openalex.org/C9760119","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interactome","level":3,"score":0.9265016317367554},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6200295686721802},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.592118501663208},{"id":"https://openalex.org/C121194460","wikidata":"https://www.wikidata.org/wiki/Q856741","display_name":"Random walk","level":2,"score":0.548616349697113},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.46780040860176086},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43209707736968994},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41270652413368225},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.38228940963745117},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3618984520435333},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.26549386978149414},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20914360880851746},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20637312531471252},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1444355845451355},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.10803452134132385},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/bibm47256.2019.8982929","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm47256.2019.8982929","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:iris.luiss.it:11385/253806","is_oa":false,"landing_page_url":"https://hdl.handle.net/11385/253806","pdf_url":null,"source":{"id":"https://openalex.org/S4377196446","display_name":"IRIS - Institutional Research Information System (Libera Universit\u00e0 Internazionale degli Studi Sociali Guido Carli)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I56441308","host_organization_name":"Libera Universit\u00e0 Internazionale degli Studi Sociali Guido Carli","host_organization_lineage":["https://openalex.org/I56441308"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:iris.uniroma1.it:11573/1332609","is_oa":false,"landing_page_url":"http://hdl.handle.net/11573/1332609","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1614298861","https://openalex.org/W1991645955","https://openalex.org/W1992960340","https://openalex.org/W2006402375","https://openalex.org/W2020301095","https://openalex.org/W2038122249","https://openalex.org/W2043764521","https://openalex.org/W2051674484","https://openalex.org/W2056782561","https://openalex.org/W2062533676","https://openalex.org/W2067305633","https://openalex.org/W2083045667","https://openalex.org/W2097498614","https://openalex.org/W2100582962","https://openalex.org/W2110553827","https://openalex.org/W2119220491","https://openalex.org/W2119412782","https://openalex.org/W2163485494","https://openalex.org/W2163575276","https://openalex.org/W2167821759","https://openalex.org/W2537679995","https://openalex.org/W2619358879","https://openalex.org/W2789374663","https://openalex.org/W2803987171","https://openalex.org/W2826750344","https://openalex.org/W2916767477","https://openalex.org/W2938392017","https://openalex.org/W2949184913","https://openalex.org/W2952654989","https://openalex.org/W2964198126","https://openalex.org/W4240681178","https://openalex.org/W6636510571","https://openalex.org/W6759562974"],"related_works":["https://openalex.org/W4292634579","https://openalex.org/W17155033","https://openalex.org/W2022326234","https://openalex.org/W1531941329","https://openalex.org/W4388694323","https://openalex.org/W3215098729","https://openalex.org/W4243081378","https://openalex.org/W1979330259","https://openalex.org/W2622356054","https://openalex.org/W2804670115"],"abstract_inverted_index":{"We":[0,56],"predict":[1],"disease-genes":[2],"relations":[3],"on":[4],"the":[5,28,75,80,87],"human":[6],"interactome":[7,76],"network":[8],"using":[9],"a":[10],"methodology":[11],"that":[12,59],"jointly":[13],"learns":[14],"functional":[15],"and":[16,66,78,96],"connectivity":[17],"patterns":[18],"surrounding":[19],"proteins.":[20],"To":[21],"exploit":[22],"at":[23],"best":[24],"latent":[25],"information":[26],"in":[27,92],"network,":[29],"we":[30],"propose":[31],"an":[32],"extended":[33],"version":[34],"of":[35,61,94],"random":[36],"walks,":[37],"named":[38],"Random":[39],"Watcher-Walker":[40],"(RW":[41],"<sup":[42,63],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[43,64],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">2</sup>":[44,65],"),":[45],"which":[46],"is":[47,71],"shown":[48],"to":[49,74,79,89],"perform":[50],"better":[51],"than":[52],"other":[53,67],"state-of-the-art":[54,69],"algorithms.":[55],"also":[57],"show":[58],"performance":[60],"RW":[62],"compared":[68],"algorithms":[70],"extremely":[72],"sensitive":[73],"used,":[77],"adopted":[81],"disease":[82],"categorizations,":[83],"since":[84],"this":[85],"influences":[86],"ability":[88],"capture":[90],"regularities":[91],"presence":[93],"sparsity":[95],"incompleteness.":[97]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
