{"id":"https://openalex.org/W2911320435","doi":"https://doi.org/10.1109/bibm.2018.8621559","title":"Protein Network Analysis by the Interaction Force between Protein Molecules","display_name":"Protein Network Analysis by the Interaction Force between Protein Molecules","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2911320435","doi":"https://doi.org/10.1109/bibm.2018.8621559","mag":"2911320435"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2018.8621559","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621559","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083598817","display_name":"Mengjia Shen","orcid":null},"institutions":[{"id":"https://openalex.org/I76214153","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32","country_code":"CN","type":"education","lineage":["https://openalex.org/I76214153"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Mengjia Shen","raw_affiliation_strings":["School of information Science and Engineering, Lanzhou University, Lanzhou, China"],"affiliations":[{"raw_affiliation_string":"School of information Science and Engineering, Lanzhou University, Lanzhou, China","institution_ids":["https://openalex.org/I76214153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101558150","display_name":"Zhixin Ma","orcid":"https://orcid.org/0009-0007-7775-3157"},"institutions":[{"id":"https://openalex.org/I76214153","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32","country_code":"CN","type":"education","lineage":["https://openalex.org/I76214153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhixin Ma","raw_affiliation_strings":["Gansu Shining Science and Technology Co.. Ltd, Lanzhou, China","School of information Science and Engineering, Lanzhou University, Lanzhou, China"],"affiliations":[{"raw_affiliation_string":"Gansu Shining Science and Technology Co.. Ltd, Lanzhou, China","institution_ids":[]},{"raw_affiliation_string":"School of information Science and Engineering, Lanzhou University, Lanzhou, China","institution_ids":["https://openalex.org/I76214153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077154020","display_name":"Zhicheng Ma","orcid":"https://orcid.org/0009-0002-6572-2912"},"institutions":[{"id":"https://openalex.org/I76214153","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32","country_code":"CN","type":"education","lineage":["https://openalex.org/I76214153"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhicheng Ma","raw_affiliation_strings":["Gansu Shining Science and Technology Co.. Ltd, Lanzhou, China","School of information Science and Engineering, Lanzhou University, Lanzhou, China"],"affiliations":[{"raw_affiliation_string":"Gansu Shining Science and Technology Co.. Ltd, Lanzhou, China","institution_ids":[]},{"raw_affiliation_string":"School of information Science and Engineering, Lanzhou University, Lanzhou, China","institution_ids":["https://openalex.org/I76214153"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5104118680","display_name":"Shibo Yang","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shibo Yang","raw_affiliation_strings":["Gansu Shining Science and Technology Co.. Ltd, Lanzhou, China"],"affiliations":[{"raw_affiliation_string":"Gansu Shining Science and Technology Co.. Ltd, Lanzhou, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5083598817"],"corresponding_institution_ids":["https://openalex.org/I76214153"],"apc_list":null,"apc_paid":null,"fwci":0.0931,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.50226714,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"37","issue":null,"first_page":"1215","last_page":"1220"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-interaction-networks","display_name":"Protein Interaction Networks","score":0.7310904264450073},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6250939965248108},{"id":"https://openalex.org/keywords/van-der-waals-force","display_name":"van der Waals force","score":0.515084445476532},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5113450884819031},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4847266674041748},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.47421765327453613},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4638056755065918},{"id":"https://openalex.org/keywords/molecule","display_name":"Molecule","score":0.24392762780189514},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.17918428778648376}],"concepts":[{"id":"https://openalex.org/C2909613950","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Protein Interaction Networks","level":3,"score":0.7310904264450073},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6250939965248108},{"id":"https://openalex.org/C126061179","wikidata":"https://www.wikidata.org/wiki/Q189627","display_name":"van der Waals force","level":3,"score":0.515084445476532},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5113450884819031},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4847266674041748},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.47421765327453613},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4638056755065918},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.24392762780189514},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.17918428778648376},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1109/bibm.2018.8621559","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621559","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:ir.lzu.edu.cn/:262010/282162","is_oa":false,"landing_page_url":"http://ir.lzu.edu.cn/handle/262010/282162","pdf_url":null,"source":{"id":"https://openalex.org/S4406923049","display_name":"Lanzhou University Institutional Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Proceedings Paper"},{"id":"pmh:oai:ir.lzu.edu.cn/:262010/269337","is_oa":false,"landing_page_url":"http://ir.lzu.edu.cn/handle/262010/269337","pdf_url":null,"source":{"id":"https://openalex.org/S4406923049","display_name":"Lanzhou University Institutional Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"\u4f1a\u8bae\u8bba\u6587"},{"id":"pmh:oai:ir.lzu.edu.cn/:262010/281105","is_oa":false,"landing_page_url":"http://ir.lzu.edu.cn/handle/262010/281105","pdf_url":null,"source":{"id":"https://openalex.org/S4406923049","display_name":"Lanzhou University Institutional Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Proceedings Paper"},{"id":"pmh:oai:ir.lzu.edu.cn/:262010/292959","is_oa":false,"landing_page_url":"http://ir.lzu.edu.cn/handle/262010/292959","pdf_url":null,"source":{"id":"https://openalex.org/S4406923049","display_name":"Lanzhou University Institutional Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Proceedings Paper"},{"id":"pmh:oai:ir.lzu.edu.cn/:262010/403862","is_oa":false,"landing_page_url":"https://ieeexplore.ieee.org/document/8621559/","pdf_url":null,"source":{"id":"https://openalex.org/S4406923049","display_name":"Lanzhou University Institutional Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference article (CA)"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1485582261","https://openalex.org/W1854214752","https://openalex.org/W1964444099","https://openalex.org/W1973247012","https://openalex.org/W1986214964","https://openalex.org/W1987363726","https://openalex.org/W2003272700","https://openalex.org/W2018642282","https://openalex.org/W2082565035","https://openalex.org/W2106202847","https://openalex.org/W2107067224","https://openalex.org/W2117691146","https://openalex.org/W2124166542","https://openalex.org/W2124354935","https://openalex.org/W2130687290","https://openalex.org/W2132202037","https://openalex.org/W2136850043","https://openalex.org/W2163485494","https://openalex.org/W2165533101","https://openalex.org/W2745750801","https://openalex.org/W2801069509","https://openalex.org/W6639055396"],"related_works":["https://openalex.org/W4229728790","https://openalex.org/W2800059693","https://openalex.org/W1987705964","https://openalex.org/W1841073402","https://openalex.org/W4377086792","https://openalex.org/W2414873431","https://openalex.org/W2949751838","https://openalex.org/W2145100112","https://openalex.org/W2137238644","https://openalex.org/W4384303460"],"abstract_inverted_index":{"Biological":[0],"systems":[1],"are":[2,9],"often":[3],"represented":[4],"as":[5],"protein":[6,19,29,59,62,76,83,86,122,129,139,166,169],"networks":[7,20,140],"which":[8],"complex":[10],"sets":[11],"of":[12,41,46,111,128,164],"binary":[13],"interactions":[14],"between":[15,82,98,121],"different":[16],"entities.":[17],"And":[18],"analysis":[21],"is":[22,36,103,134],"viable":[23],"method":[24,163],"to":[25,57,108],"understand":[26],"disease":[27],"machinery,":[28],"functions":[30],"and":[31,44,155,161],"drug":[32],"repositioning.":[33],"However,":[34],"it":[35],"a":[37,70,90],"huge":[38],"challenge":[39],"because":[40],"the":[42,79,95,101,109,118,126],"diversity":[43],"complexity":[45],"networks.":[47,64,170],"Many":[48],"algorithms":[49],"based":[50,124],"on":[51,125,136],"graph":[52],"theory":[53],"have":[54],"been":[55],"proposed":[56,132],"identify":[58],"complexes":[60,167],"in":[61,100,104],"interaction":[63,80,96,119],"In":[65],"this":[66],"paper,":[67],"we":[68],"present":[69],"novel":[71],"algorithm":[72,133,157],"(IFPM)":[73],"that":[74,147],"analyzes":[75],"network":[77,87,102],"by":[78],"force":[81,97,120],"molecules.":[84],"The":[85,131,144],"can":[88],"reach":[89],"stable":[91],"state":[92],"only":[93],"if":[94],"proteins":[99],"equilibrium":[105],"state.":[106],"According":[107],"definition":[110],"Van":[112],"der":[113],"Waals":[114],"force,":[115],"IFPM":[116,148],"defines":[117],"molecules":[123],"structure":[127],"network.":[130],"tested":[135],"several":[137],"publicly":[138],"with":[141],"comparative":[142],"algorithms.":[143],"results":[145],"show":[146],"performs":[149],"better":[150],"than":[151],"other":[152],"existing":[153],"methods":[154],"our":[156],"provides":[158],"an":[159],"accurate":[160],"scalable":[162],"detecting":[165],"within":[168]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
