{"id":"https://openalex.org/W2911522906","doi":"https://doi.org/10.1109/bibm.2018.8621541","title":"Protein Complexes Detection Based on Global Network Representation Learning","display_name":"Protein Complexes Detection Based on Global Network Representation Learning","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2911522906","doi":"https://doi.org/10.1109/bibm.2018.8621541","mag":"2911522906"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2018.8621541","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621541","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022604762","display_name":"Bo Xu","orcid":"https://orcid.org/0000-0003-4135-0683"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bo Xu","raw_affiliation_strings":["School of Software, Dalian University of Technology, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101602255","display_name":"Kun Li","orcid":"https://orcid.org/0000-0002-0012-7322"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kun Li","raw_affiliation_strings":["School of Software, Dalian University of Technology, China"],"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100705977","display_name":"Xiaoxia Liu","orcid":"https://orcid.org/0009-0003-6662-9020"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoxia Liu","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101753965","display_name":"Delong Liu","orcid":"https://orcid.org/0000-0003-2190-1644"},"institutions":[{"id":"https://openalex.org/I4210092032","display_name":"China Institute of Water Resources and Hydropower Research","ror":"https://ror.org/00m4czf33","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210092032"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Delong Liu","raw_affiliation_strings":["China Institute of Water Resources and Hydropower Research, China"],"affiliations":[{"raw_affiliation_string":"China Institute of Water Resources and Hydropower Research, China","institution_ids":["https://openalex.org/I4210092032"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046020427","display_name":"Yijia Zhang","orcid":"https://orcid.org/0000-0002-5843-4675"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yijia Zhang","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023931221","display_name":"Hongfei Lin","orcid":"https://orcid.org/0000-0003-0872-7688"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfei Lin","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051597671","display_name":"Zhihao Yang","orcid":"https://orcid.org/0000-0001-6186-2024"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihao Yang","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100370493","display_name":"Jian Wang","orcid":"https://orcid.org/0000-0002-8116-7691"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Wang","raw_affiliation_strings":["College of Computer Science and Technology, Dalian University of Technology, China"],"affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089615958","display_name":"Feng Xia","orcid":"https://orcid.org/0000-0002-8324-1859"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Feng Xia","raw_affiliation_strings":["Key Laboratory for Ubiquitous Network and Service Software of Liaoning, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory for Ubiquitous Network and Service Software of Liaoning, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5022604762"],"corresponding_institution_ids":["https://openalex.org/I27357992"],"apc_list":null,"apc_paid":null,"fwci":0.2758,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.57955166,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"440","issue":null,"first_page":"210","last_page":"213"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9912999868392944,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7654540538787842},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.6259390711784363},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.5920752286911011},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.5292626619338989},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5162184238433838},{"id":"https://openalex.org/keywords/feature-learning","display_name":"Feature learning","score":0.49886131286621094},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4971828758716583},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.44487422704696655},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.44034093618392944},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.43556222319602966},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4345273971557617},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4335659444332123},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4148011803627014},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.18965864181518555}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7654540538787842},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.6259390711784363},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.5920752286911011},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.5292626619338989},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5162184238433838},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.49886131286621094},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4971828758716583},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.44487422704696655},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.44034093618392944},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.43556222319602966},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4345273971557617},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4335659444332123},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4148011803627014},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.18965864181518555},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm.2018.8621541","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621541","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:vital:16407","is_oa":false,"landing_page_url":"http://researchonline.federation.edu.au/vital/access/HandleResolver/1959.17/183907","pdf_url":null,"source":{"id":"https://openalex.org/S4306400234","display_name":"FedUni ResearchOnline (Federation University Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210158496","host_organization_name":"Australian Federation of University Women \u2013 South Australia","host_organization_lineage":["https://openalex.org/I4210158496"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1888005072","https://openalex.org/W1970679478","https://openalex.org/W1986214964","https://openalex.org/W2006570827","https://openalex.org/W2050721857","https://openalex.org/W2082565035","https://openalex.org/W2090422756","https://openalex.org/W2100585269","https://openalex.org/W2116117181","https://openalex.org/W2116447934","https://openalex.org/W2121564430","https://openalex.org/W2132582966","https://openalex.org/W2136850043","https://openalex.org/W2138003801","https://openalex.org/W2140280811","https://openalex.org/W2154851992","https://openalex.org/W2163485494","https://openalex.org/W2164278908","https://openalex.org/W2242161203","https://openalex.org/W2521617650","https://openalex.org/W2574817444","https://openalex.org/W2579372251","https://openalex.org/W2622489478","https://openalex.org/W2962756421","https://openalex.org/W2962975498","https://openalex.org/W3103253084","https://openalex.org/W3104097132","https://openalex.org/W4292363360","https://openalex.org/W6690230747","https://openalex.org/W6731976766","https://openalex.org/W6732461846","https://openalex.org/W6738625001","https://openalex.org/W6745857082","https://openalex.org/W7028615529"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2183306018","https://openalex.org/W2549990292","https://openalex.org/W2345479200","https://openalex.org/W2804364458","https://openalex.org/W2951819827","https://openalex.org/W2849310602","https://openalex.org/W4298130764","https://openalex.org/W2132641928","https://openalex.org/W4310225030"],"abstract_inverted_index":{"Detecting":[0],"protein":[1,87,154,162],"complexes":[2,44,88,155,163],"from":[3],"protein-protein":[4],"interaction":[5],"(PPI)":[6],"networks":[7],"allows":[8],"biologists":[9],"reveal":[10],"the":[11,28,84,93,109,157,179],"principle":[12],"of":[13,30,86,92,184],"cellular":[14],"organization":[15],"and":[16,72,102,128],"functions.":[17],"Existing":[18],"computational":[19],"methods":[20,54,97],"try":[21],"to":[22,26,39,138,151],"incorporate":[23],"biological":[24,41,129],"evidence":[25],"enhance":[27],"quality":[29],"predicted":[31],"complexes.":[32],"However,":[33,90],"it":[34],"is":[35,80],"still":[36],"a":[37,48,65,117,147],"challenge":[38],"integrate":[40],"information":[42],"into":[43,106],"discovery":[45],"process":[46],"under":[47],"unified":[49],"framework.":[50],"Recently,":[51],"network":[52,70,95,120,126],"embedding":[53,96,121,158],"showed":[55],"their":[56],"effectiveness":[57],"in":[58,83,182],"graph":[59],"data":[60],"analysis":[61],"tasks.":[62],"It":[63],"provides":[64],"framework":[66],"for":[67,142],"incorporating":[68],"both":[69],"structure":[71,104,127],"additional":[73],"node":[74,99],"attribute":[75,100],"information.":[76,130],"This":[77,160],"salient":[78],"feature":[79],"particularly":[81],"desirable":[82],"context":[85],"identification.":[89],"none":[91],"existing":[94],"take":[98],"proximity":[101,105],"high-order":[103],"account":[107],"at":[108],"same":[110],"time.":[111],"In":[112],"this":[113,133],"paper,":[114],"we":[115,145,166],"propose":[116],"novel":[118,161],"global":[119,125,134],"method,":[122],"which":[123],"preserves":[124],"We":[131],"utilize":[132],"representation":[135,141],"learning":[136],"method":[137,150,165,177],"learn":[139],"vector":[140],"proteins.":[143],"Then,":[144],"use":[146],"seed-extension":[148],"clustering":[149],"discover":[152],"overlapping":[153],"with":[156],"results.":[159],"detection":[164],"called":[167],"GLONE.":[168],"Evaluated":[169],"on":[170],"five":[171],"real":[172],"yeast":[173],"PPI":[174],"networks,":[175],"our":[176],"outperforms":[178],"competing":[180],"algorithms":[181],"terms":[183],"different":[185],"evaluation":[186],"metrics.":[187]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
