{"id":"https://openalex.org/W2913583265","doi":"https://doi.org/10.1109/bibm.2018.8621469","title":"A Weak Supervised Learning Method for Essential Protein Detection Based on STRING Database and Learning Representation","display_name":"A Weak Supervised Learning Method for Essential Protein Detection Based on STRING Database and Learning Representation","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2913583265","doi":"https://doi.org/10.1109/bibm.2018.8621469","mag":"2913583265"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2018.8621469","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621469","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087031397","display_name":"Zhizheng Wang","orcid":"https://orcid.org/0000-0003-2584-136X"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhizheng Wang","raw_affiliation_strings":["Computer Science and Technology, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101472979","display_name":"Yuanyuan Sun","orcid":"https://orcid.org/0000-0003-2805-5911"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanyuan Sun","raw_affiliation_strings":["Computer Science and Technology, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069089050","display_name":"Yawen Guan","orcid":"https://orcid.org/0000-0003-4563-1263"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yawen Guan","raw_affiliation_strings":["Computer Science and Technology, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100381206","display_name":"Yibin Zhang","orcid":"https://orcid.org/0000-0002-8677-1425"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]},{"id":"https://openalex.org/I4210105529","display_name":"Daqing Oilfield General Hospital","ror":"https://ror.org/01ey7we33","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210105529"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yibin Zhang","raw_affiliation_strings":["Computer Science and Technology, Dalian University of Technology, Dalian, China","Daqing Oilfteld General Hospital, Daqing, China"],"affiliations":[{"raw_affiliation_string":"Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"Daqing Oilfteld General Hospital, Daqing, China","institution_ids":["https://openalex.org/I4210105529"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032091007","display_name":"Liang Yang","orcid":"https://orcid.org/0000-0002-5557-7515"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liang Yang","raw_affiliation_strings":["Computer Science and Technology, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067849336","display_name":"Kan Xu","orcid":"https://orcid.org/0000-0003-1418-1458"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kan Xu","raw_affiliation_strings":["Computer Science and Technology, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046020427","display_name":"Yijia Zhang","orcid":"https://orcid.org/0000-0002-5843-4675"},"institutions":[{"id":"https://openalex.org/I4210105529","display_name":"Daqing Oilfield General Hospital","ror":"https://ror.org/01ey7we33","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210105529"]},{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yijia Zhang","raw_affiliation_strings":["Computer Science and Technology, Dalian University of Technology, Dalian, China","Daqing Oilfteld General Hospital, Daqing, China"],"affiliations":[{"raw_affiliation_string":"Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"Daqing Oilfteld General Hospital, Daqing, China","institution_ids":["https://openalex.org/I4210105529"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023931221","display_name":"Hongfei Lin","orcid":"https://orcid.org/0000-0003-0872-7688"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfei Lin","raw_affiliation_strings":["Computer Science and Technology, Dalian University of Technology, Dalian, China"],"affiliations":[{"raw_affiliation_string":"Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5087031397"],"corresponding_institution_ids":["https://openalex.org/I27357992"],"apc_list":null,"apc_paid":null,"fwci":0.0919,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.49276014,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"37","issue":null,"first_page":"767","last_page":"770"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.6805630922317505},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6698262691497803},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5934866666793823},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.49352896213531494},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4693297743797302},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.4479146897792816},{"id":"https://openalex.org/keywords/protein-detection","display_name":"Protein detection","score":0.42169904708862305},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3945196270942688},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34894147515296936},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.22479894757270813},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1853049397468567},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.175694078207016}],"concepts":[{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.6805630922317505},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6698262691497803},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5934866666793823},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.49352896213531494},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4693297743797302},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.4479146897792816},{"id":"https://openalex.org/C3019566124","wikidata":"https://www.wikidata.org/wiki/Q85794778","display_name":"Protein detection","level":2,"score":0.42169904708862305},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3945196270942688},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34894147515296936},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.22479894757270813},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1853049397468567},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.175694078207016},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2018.8621469","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621469","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.4699999988079071}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1888005072","https://openalex.org/W1988496202","https://openalex.org/W1998152384","https://openalex.org/W1999808266","https://openalex.org/W2006683252","https://openalex.org/W2007245700","https://openalex.org/W2088590769","https://openalex.org/W2106391842","https://openalex.org/W2113613985","https://openalex.org/W2119114096","https://openalex.org/W2142535891","https://openalex.org/W2146447390","https://openalex.org/W2152801298","https://openalex.org/W2154851992","https://openalex.org/W2155320925","https://openalex.org/W2162891889","https://openalex.org/W2962756421","https://openalex.org/W3104097132","https://openalex.org/W6652101430"],"related_works":["https://openalex.org/W2062195135","https://openalex.org/W2003932708","https://openalex.org/W2610635234","https://openalex.org/W1967424056","https://openalex.org/W2284877871","https://openalex.org/W2795079307","https://openalex.org/W2138102289","https://openalex.org/W2793058541","https://openalex.org/W868043274","https://openalex.org/W1983629434"],"abstract_inverted_index":{"The":[0,140,167],"detection":[1],"of":[2,17,58,75,95,113,142,151,181,202,220],"essential":[3,25,66,100,138,144,170,221],"proteins":[4,67,72,78,101,145],"in":[5,42,69,79,102,163,217],"the":[6,15,21,38,43,52,56,76,93,99,103,114,120,128,137,148,160,164,175,218],"protein-protein":[7],"interaction":[8],"(PPI)":[9],"network":[10,32,45,116],"is":[11,47,209],"important":[12],"for":[13,24],"understanding":[14],"functions":[16],"organisms.":[18],"At":[19],"present,":[20],"algorithms":[22,132],"used":[23,134],"protein":[26,171,222],"search":[27,65],"are":[28,73,133,188],"mainly":[29],"based":[30,91],"on":[31,92,169],"topology":[33],"and":[34,61,124],"prior":[35,71],"knowledge,":[36],"so":[37],"biological":[39,186,203],"knowledge":[40],"contained":[41,205],"PPI":[44,115],"itself":[46],"neglected.":[48],"Therefore,":[49],"we":[50,84,110],"proposed":[51],"algorithm":[53,90,105,123,153],"that":[54,147,174],"integrates":[55],"Database":[57],"Interacting":[59],"Proteins":[60],"STRING":[62,80,125,207],"database":[63,208],"to":[64,135],"(IDSSP),":[68],"which":[70],"composed":[74],"highest-scoring":[77],"database.":[81,126],"In":[82,196],"addition,":[83],"propose":[85],"a":[86,197],"weak":[87],"supervised":[88],"learning":[89,122,130],"results":[94,106,141,168],"IDSSP.":[96],"We":[97],"label":[98],"IDSSP":[104,152],"at":[107],"first.":[108],"Then,":[109],"extract":[111],"features":[112,187,216],"nodes":[117],"by":[118,156,206],"utilizing":[119],"representation":[121],"Finally,":[127],"machine":[129],"classification":[131,172,182],"classify":[136],"proteins.":[139],"searching":[143],"show":[146],"top-k":[149],"precision":[150],"has":[154],"increased":[155],"11.9%":[157],"compared":[158],"with":[159,185,192],"state-of-art":[161],"methods":[162,183],"best":[165],"situation.":[166],"indicate":[173],"F":[176],"<sub":[177],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[178],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">1</sub>":[179],"-score":[180],"combining":[184],"higher":[189],"than":[190,212],"those":[191],"only":[193,213],"topological":[194,215],"features.":[195],"conclusion,":[198],"making":[199],"full":[200],"use":[201],"information":[204],"more":[210],"effective":[211],"using":[214],"task":[219],"detection.":[223]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
