{"id":"https://openalex.org/W2914019595","doi":"https://doi.org/10.1109/bibm.2018.8621458","title":"OntoKeeper: Semiotic-driven Ontology Evaluation Tool For Biomedical Ontologists","display_name":"OntoKeeper: Semiotic-driven Ontology Evaluation Tool For Biomedical Ontologists","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2914019595","doi":"https://doi.org/10.1109/bibm.2018.8621458","mag":"2914019595"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2018.8621458","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621458","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082839085","display_name":"Muhammad Amith","orcid":"https://orcid.org/0000-0003-4333-1857"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Muhammad Amith","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center, Houston, TX, USA"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center, Houston, TX, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066605872","display_name":"Frank J. Manion","orcid":"https://orcid.org/0000-0003-1030-6348"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Frank Manion","raw_affiliation_strings":["Department of Systems, Populations and Leadership, University of Michigan School of Nursing, Ann Arbor, MI, USA"],"affiliations":[{"raw_affiliation_string":"Department of Systems, Populations and Leadership, University of Michigan School of Nursing, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075227410","display_name":"Chen Liang","orcid":"https://orcid.org/0000-0002-9803-9880"},"institutions":[{"id":"https://openalex.org/I919208787","display_name":"Louisiana Tech University","ror":"https://ror.org/04q9esz89","country_code":"US","type":"education","lineage":["https://openalex.org/I2799628689","https://openalex.org/I919208787"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chen Liang","raw_affiliation_strings":["Health Informatics & Info. Management, Lousiana Tech University, Ruston, LA, USA"],"affiliations":[{"raw_affiliation_string":"Health Informatics & Info. Management, Lousiana Tech University, Ruston, LA, USA","institution_ids":["https://openalex.org/I919208787"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057980907","display_name":"Marcelline R. Harris","orcid":"https://orcid.org/0000-0002-3957-6643"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcelline Harris","raw_affiliation_strings":["Department of Systems, Populations and Leadership, University of Michigan School of Nursing, Ann Arbor, MI, USA"],"affiliations":[{"raw_affiliation_string":"Department of Systems, Populations and Leadership, University of Michigan School of Nursing, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042799106","display_name":"Dennis Wang","orcid":"https://orcid.org/0000-0003-0068-1005"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dennis Wang","raw_affiliation_strings":["University of Texas, Austin, TX, USA"],"affiliations":[{"raw_affiliation_string":"University of Texas, Austin, TX, USA","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024742201","display_name":"Yongqun He","orcid":"https://orcid.org/0000-0001-9189-9661"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yongqun He","raw_affiliation_strings":["Center for Computational Medicine & Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Medicine & Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076058129","display_name":"Cui Tao","orcid":"https://orcid.org/0000-0002-4267-1924"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cui Tao","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center, Houston, TX, USA"],"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center, Houston, TX, USA","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5082839085"],"corresponding_institution_ids":["https://openalex.org/I919571938"],"apc_list":null,"apc_paid":null,"fwci":0.8144,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.80561129,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"245","issue":null,"first_page":"1614","last_page":"1617"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9520000219345093,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8227306008338928},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7761215567588806},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.739600419998169},{"id":"https://openalex.org/keywords/ontology-engineering","display_name":"Ontology engineering","score":0.6402328610420227},{"id":"https://openalex.org/keywords/artifact","display_name":"Artifact (error)","score":0.6336274743080139},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.6064677238464355},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.5848084688186646},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5508310794830322},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.5033676028251648},{"id":"https://openalex.org/keywords/semiotics","display_name":"Semiotics","score":0.4835076630115509},{"id":"https://openalex.org/keywords/metric","display_name":"Metric (unit)","score":0.47059667110443115},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4514238238334656},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4420330822467804},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.4299159348011017},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2346172332763672},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.15837913751602173},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.11946240067481995},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11544457077980042},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.0853331983089447}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8227306008338928},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7761215567588806},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.739600419998169},{"id":"https://openalex.org/C2778820784","wikidata":"https://www.wikidata.org/wiki/Q1027508","display_name":"Ontology engineering","level":4,"score":0.6402328610420227},{"id":"https://openalex.org/C2779010991","wikidata":"https://www.wikidata.org/wiki/Q2720909","display_name":"Artifact (error)","level":2,"score":0.6336274743080139},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.6064677238464355},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.5848084688186646},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5508310794830322},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.5033676028251648},{"id":"https://openalex.org/C139997677","wikidata":"https://www.wikidata.org/wiki/Q60195","display_name":"Semiotics","level":2,"score":0.4835076630115509},{"id":"https://openalex.org/C176217482","wikidata":"https://www.wikidata.org/wiki/Q860554","display_name":"Metric (unit)","level":2,"score":0.47059667110443115},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4514238238334656},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4420330822467804},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.4299159348011017},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2346172332763672},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.15837913751602173},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.11946240067481995},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11544457077980042},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0853331983089447},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2018.8621458","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621458","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W174491619","https://openalex.org/W1510650956","https://openalex.org/W1643913537","https://openalex.org/W2034626816","https://openalex.org/W2042037135","https://openalex.org/W2072026461","https://openalex.org/W2129634338","https://openalex.org/W2149040964","https://openalex.org/W2189408243","https://openalex.org/W2269878751","https://openalex.org/W2332013542","https://openalex.org/W2408282140","https://openalex.org/W2608188202","https://openalex.org/W2786943214","https://openalex.org/W2791800558","https://openalex.org/W2797057358","https://openalex.org/W2903016656","https://openalex.org/W2920733670","https://openalex.org/W3023852443","https://openalex.org/W6607113755","https://openalex.org/W6636880475","https://openalex.org/W6687014690","https://openalex.org/W6713909797","https://openalex.org/W6748471822","https://openalex.org/W6756461777","https://openalex.org/W6995625817"],"related_works":["https://openalex.org/W2608149786","https://openalex.org/W2102229151","https://openalex.org/W2012420033","https://openalex.org/W2365397974","https://openalex.org/W152870918","https://openalex.org/W1794266373","https://openalex.org/W2396086199","https://openalex.org/W2732632690","https://openalex.org/W149627178","https://openalex.org/W4206428734"],"abstract_inverted_index":{"Evaluation":[0],"for":[1,83],"ontologies":[2,12],"is":[3,29,67],"an":[4],"important":[5],"phase":[6],"in":[7],"ontology":[8,73,80],"engineering.":[9],"When":[10],"evaluating":[11],"the":[13,23,37,40,68],"designer":[14],"needs":[15],"to":[16],"assess":[17],"validation":[18],"and":[19,32,63],"verification":[20],"aspects":[21],"of":[22,39,70],"knowledge":[24,84],"artifact.":[25],"Yet,":[26],"this":[27,46],"task":[28],"often":[30],"disregarded,":[31],"therefore,":[33],"tools":[34,75],"that":[35,55,76],"accommodate":[36],"workflow":[38],"biomedical":[41],"ontologists":[42],"are":[43],"needed.":[44],"In":[45],"paper.":[47],"we":[48,53],"introduce":[49],"OntoKeeper,":[50],"a":[51,57,71],"tool":[52],"developed":[54],"utilizes":[56],"semiotic-driven":[58],"metric":[59],"proposed":[60],"by":[61],"Burton-Jones":[62],"colleagues.":[64],"Overall,":[65],"OntoKeeper":[66],"first":[69],"few":[72],"evaluation":[74,81],"can":[77],"help":[78],"provide":[79],"functionality":[82],"engineers.":[85]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
