{"id":"https://openalex.org/W2913637406","doi":"https://doi.org/10.1109/bibm.2018.8621404","title":"Parallel Pair-Wise Interaction for Multi-Agent Immune Systems Modelling","display_name":"Parallel Pair-Wise Interaction for Multi-Agent Immune Systems Modelling","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2913637406","doi":"https://doi.org/10.1109/bibm.2018.8621404","mag":"2913637406"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2018.8621404","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621404","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084786722","display_name":"Mozhgan Kabiri Chimeh","orcid":"https://orcid.org/0000-0002-2561-7926"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mozhgan K. Chimeh","raw_affiliation_strings":["Dept. of Computer Science, University of Sheffield, Sheffield, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, University of Sheffield, Sheffield, UK","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039912522","display_name":"Peter Heywood","orcid":"https://orcid.org/0000-0001-9277-8394"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter Heywood","raw_affiliation_strings":["Dept. of Computer Science, University of Sheffield, Sheffield, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, University of Sheffield, Sheffield, UK","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003874484","display_name":"Marzio Pennisi","orcid":"https://orcid.org/0000-0003-0231-7653"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marzio Pennisi","raw_affiliation_strings":["Dept. of Mathematics and Computer Science, University of Catania, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Mathematics and Computer Science, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044340074","display_name":"Francesco Pappalardo","orcid":"https://orcid.org/0000-0003-1668-3320"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesco Pappalardo","raw_affiliation_strings":["Dept. of Drug Sciences, University of Catania, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Drug Sciences, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011413276","display_name":"Paul Richmond","orcid":"https://orcid.org/0000-0002-4657-5518"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul Richmond","raw_affiliation_strings":["Dept. of Computer Science, University of Sheffield, Sheffield, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, University of Sheffield, Sheffield, UK","institution_ids":["https://openalex.org/I91136226"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.8788,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.87215026,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"12","issue":null,"first_page":"1367","last_page":"1373"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12391","display_name":"Artificial Immune Systems Applications","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10482","display_name":"Mathematical and Theoretical Epidemiology and Ecology Models","score":0.9690999984741211,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7575114965438843},{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.6416633725166321},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.5354129672050476},{"id":"https://openalex.org/keywords/complex-system","display_name":"Complex system","score":0.47904717922210693},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.45512741804122925},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.4472445547580719},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4348711669445038},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.4219413995742798},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.4133495092391968},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2523500621318817},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09906396269798279}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7575114965438843},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.6416633725166321},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.5354129672050476},{"id":"https://openalex.org/C47822265","wikidata":"https://www.wikidata.org/wiki/Q854457","display_name":"Complex system","level":2,"score":0.47904717922210693},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.45512741804122925},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.4472445547580719},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4348711669445038},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.4219413995742798},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.4133495092391968},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2523500621318817},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09906396269798279},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm.2018.8621404","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621404","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:eprints.whiterose.ac.uk:155215","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Proceedings Paper"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.44999998807907104}],"awards":[{"id":"https://openalex.org/G2309032329","display_name":null,"funder_award_id":"EP/N018869/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W2497774","https://openalex.org/W22221301","https://openalex.org/W250107974","https://openalex.org/W1504343806","https://openalex.org/W1512999284","https://openalex.org/W1513620852","https://openalex.org/W1521947031","https://openalex.org/W1879689233","https://openalex.org/W1978486653","https://openalex.org/W1980034145","https://openalex.org/W1994509201","https://openalex.org/W2011438811","https://openalex.org/W2028499920","https://openalex.org/W2070891817","https://openalex.org/W2086370911","https://openalex.org/W2096890314","https://openalex.org/W2102742832","https://openalex.org/W2124677924","https://openalex.org/W2159360750","https://openalex.org/W2161575244","https://openalex.org/W2164632491","https://openalex.org/W2165307608","https://openalex.org/W2169377408","https://openalex.org/W2170316986","https://openalex.org/W2172275426","https://openalex.org/W2338717024","https://openalex.org/W2477558360","https://openalex.org/W2516032119","https://openalex.org/W2541748267","https://openalex.org/W2546505240","https://openalex.org/W2575970083","https://openalex.org/W2756268336","https://openalex.org/W2771566192","https://openalex.org/W2793599788","https://openalex.org/W3121523601","https://openalex.org/W3138798301","https://openalex.org/W3145638023","https://openalex.org/W4205300089","https://openalex.org/W4301428739","https://openalex.org/W6668329045"],"related_works":["https://openalex.org/W2045155990","https://openalex.org/W4313163053","https://openalex.org/W4300973204","https://openalex.org/W3045811229","https://openalex.org/W2357256365","https://openalex.org/W1483408780","https://openalex.org/W4284884309","https://openalex.org/W2908749798","https://openalex.org/W2105980483","https://openalex.org/W2348502264"],"abstract_inverted_index":{"Agent":[0],"Based":[1],"Modelling":[2],"(ABM),":[3],"is":[4,19,66,85,112,126],"an":[5,136,152],"approach":[6,18,137],"for":[7,31,129,187],"modelling":[8,90],"dynamic":[9],"systems":[10,170],"and":[11,14,39,145,178],"studying":[12],"complex":[13],"emergent":[15],"behaviour.":[16],"ABM":[17,153],"a":[20,32,59,165],"very":[21,113],"common":[22],"technique":[23],"in":[24,83,91],"biological":[25,44,144,169],"domain":[26],"due":[27],"to":[28,37,42,120,138,164],"high":[29,60],"demand":[30],"large":[33,48,54],"scale":[34,49],"analysis":[35],"tool":[36],"collect":[38],"interpret":[40],"information":[41],"solve":[43],"problems.":[45],"However,":[46],"simulating":[47],"cellular":[50],"level":[51],"models":[52,124,148,192],"(i.e.":[53],"number":[55],"of":[56,62,80,99,110,143,161,168,175],"agents/entities)":[57],"require":[58],"degree":[61],"computational":[63],"power":[64],"which":[65,125],"achievable":[67],"through":[68],"parallel":[69,81,194],"computing":[70],"methods":[71],"such":[72],"as":[73,184],"Graphics":[74],"Processing":[75],"Units":[76],"(GPUs).":[77],"The":[78],"use":[79],"approaches":[82],"ABMs":[84],"growing":[86],"rapidly":[87],"specifically":[88],"when":[89],"continuous":[92,121],"space":[93,105,122],"system":[94,131,147,191],"(particle":[95],"based).":[96],"Parallel":[97],"implementation":[98],"particle":[100],"based":[101],"simulation":[102],"within":[103,151],"continuum":[104],"where":[106],"agents":[107],"contain":[108],"quantities":[109],"chemicals/substances":[111],"challenging.":[114],"Pair-wise":[115],"interactions":[116,177],"are":[117],"different":[118],"abstraction":[119],"(particle)":[123],"commonly":[127],"used":[128,183],"immune":[130,146,190],"modelling.":[132],"This":[133],"paper":[134],"describes":[135],"parallelising":[139],"the":[140,159,172,185],"key":[141],"component":[142],"(pair-wise":[149],"interactions)":[150],"model.":[154],"Our":[155],"performance":[156],"results":[157],"demonstrate":[158],"applicability":[160],"this":[162],"method":[163],"broader":[166],"class":[167],"with":[171],"same":[173],"type":[174],"cell":[176],"that":[179],"it":[180],"can":[181],"be":[182],"basis":[186],"developing":[188],"complete":[189],"on":[193],"hardware.":[195]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
