{"id":"https://openalex.org/W2911471795","doi":"https://doi.org/10.1109/bibm.2018.8621393","title":"OpenHI - An open source framework for annotating histopathological image","display_name":"OpenHI - An open source framework for annotating histopathological image","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2911471795","doi":"https://doi.org/10.1109/bibm.2018.8621393","mag":"2911471795"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2018.8621393","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621393","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003278480","display_name":"Pargorn Puttapirat","orcid":"https://orcid.org/0000-0002-4999-2915"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Pargorn Puttapirat","raw_affiliation_strings":["School of Electronic and Information Engineering, Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi, China","School of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, Shaanxi, China"],"affiliations":[{"raw_affiliation_string":"School of Electronic and Information Engineering, Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, Shaanxi, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114833544","display_name":"Haichuan Zhang","orcid":"https://orcid.org/0009-0005-0288-2937"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haichuan Zhang","raw_affiliation_strings":["School of Electronic and Information Engineering, Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi, China","School of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, Shaanxi, China"],"affiliations":[{"raw_affiliation_string":"School of Electronic and Information Engineering, Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, Shaanxi, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045482118","display_name":"Yuchen Lian","orcid":null},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuchen Lian","raw_affiliation_strings":["School of Electronic and Information Engineering, Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi, China","School of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, Shaanxi, China"],"affiliations":[{"raw_affiliation_string":"School of Electronic and Information Engineering, Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, Shaanxi, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065529317","display_name":"Chunbao Wang","orcid":"https://orcid.org/0000-0002-8795-0142"},"institutions":[{"id":"https://openalex.org/I4210121771","display_name":"First Affiliated Hospital of Xi'an Jiaotong University","ror":"https://ror.org/02tbvhh96","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210121771"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunbao Wang","raw_affiliation_strings":["Department of Pathology, the First Affiliated Hospital of Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi, China","Department of Pathology, the First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, China"],"affiliations":[{"raw_affiliation_string":"Department of Pathology, the First Affiliated Hospital of Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi, China","institution_ids":["https://openalex.org/I4210121771"]},{"raw_affiliation_string":"Department of Pathology, the First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, Shaanxi, China","institution_ids":["https://openalex.org/I4210121771"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049776440","display_name":"Xiangrong Zhang","orcid":"https://orcid.org/0000-0003-0379-2042"},"institutions":[{"id":"https://openalex.org/I4210153682","display_name":"Intelligent Health (United Kingdom)","ror":"https://ror.org/0576zak10","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210153682"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Xiangrong Zhang","raw_affiliation_strings":["Institute of Intelligent Information Processing, Xi\u2019an, Shaanxi, China","Institute of Intelligent Information Processing, Xi'an, Shaanxi, China"],"affiliations":[{"raw_affiliation_string":"Institute of Intelligent Information Processing, Xi\u2019an, Shaanxi, China","institution_ids":["https://openalex.org/I4210153682"]},{"raw_affiliation_string":"Institute of Intelligent Information Processing, Xi'an, Shaanxi, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066989029","display_name":"Lixia Yao","orcid":"https://orcid.org/0000-0002-5187-6120"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lixia Yao","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100369793","display_name":"Chen Li","orcid":"https://orcid.org/0000-0002-0079-3106"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chen Li","raw_affiliation_strings":["School of Electronic and Information Engineering, Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi, China","School of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, Shaanxi, China"],"affiliations":[{"raw_affiliation_string":"School of Electronic and Information Engineering, Xi\u2019an Jiaotong University, Xi\u2019an, Shaanxi, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"School of Electronic and Information Engineering, Xi'an Jiaotong University, Xi'an, Shaanxi, China","institution_ids":["https://openalex.org/I87445476"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5003278480"],"corresponding_institution_ids":["https://openalex.org/I87445476"],"apc_list":null,"apc_paid":null,"fwci":1.6288,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.88069671,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"1076","last_page":"1082"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8640285730361938},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8432104587554932},{"id":"https://openalex.org/keywords/automatic-image-annotation","display_name":"Automatic image annotation","score":0.6240288615226746},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.6215400099754333},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5344246029853821},{"id":"https://openalex.org/keywords/grading","display_name":"Grading (engineering)","score":0.4612945318222046},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.46099168062210083},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.4506252110004425},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3735584318637848},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.32625842094421387},{"id":"https://openalex.org/keywords/image-retrieval","display_name":"Image retrieval","score":0.3023068308830261}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8640285730361938},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8432104587554932},{"id":"https://openalex.org/C199579030","wikidata":"https://www.wikidata.org/wiki/Q2851778","display_name":"Automatic image annotation","level":4,"score":0.6240288615226746},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.6215400099754333},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5344246029853821},{"id":"https://openalex.org/C2777286243","wikidata":"https://www.wikidata.org/wiki/Q5591926","display_name":"Grading (engineering)","level":2,"score":0.4612945318222046},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.46099168062210083},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.4506252110004425},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3735584318637848},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.32625842094421387},{"id":"https://openalex.org/C1667742","wikidata":"https://www.wikidata.org/wiki/Q10927554","display_name":"Image retrieval","level":3,"score":0.3023068308830261},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C147176958","wikidata":"https://www.wikidata.org/wiki/Q77590","display_name":"Civil engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2018.8621393","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621393","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1524992328","https://openalex.org/W1900806206","https://openalex.org/W1975767702","https://openalex.org/W1977653087","https://openalex.org/W1981002063","https://openalex.org/W1985752801","https://openalex.org/W1991408439","https://openalex.org/W2015159529","https://openalex.org/W2029822264","https://openalex.org/W2105739910","https://openalex.org/W2118246710","https://openalex.org/W2138335410","https://openalex.org/W2154813452","https://openalex.org/W2189046024","https://openalex.org/W2329659234","https://openalex.org/W2612529407","https://openalex.org/W2618999197","https://openalex.org/W2732257751","https://openalex.org/W2759004613","https://openalex.org/W2762672048","https://openalex.org/W2765774350","https://openalex.org/W2772723798","https://openalex.org/W2884988214","https://openalex.org/W2952481429","https://openalex.org/W6737592719","https://openalex.org/W6753491442"],"related_works":["https://openalex.org/W2566406229","https://openalex.org/W3177930984","https://openalex.org/W2052697133","https://openalex.org/W2119028572","https://openalex.org/W2376984068","https://openalex.org/W2152482390","https://openalex.org/W2365617273","https://openalex.org/W2076896210","https://openalex.org/W2506386910","https://openalex.org/W2117928543"],"abstract_inverted_index":{"Histopathological":[0],"images":[1,26,35,112,142],"carry":[2],"informative":[3],"cellular":[4],"visual":[5],"phenotypes":[6],"and":[7,38,40,116,123],"have":[8],"been":[9,28],"digitalized":[10],"in":[11,14],"huge":[12],"amount":[13],"medical":[15],"institutes.":[16],"However,":[17],"the":[18,24,34,60,97,104,109,138,160],"lack":[19],"of":[20,31,99,140,162],"software":[21],"for":[22,36,44,59,70,95],"annotating":[23],"specialized":[25],"has":[27],"a":[29,81,92],"hurdle":[30],"fully":[32],"exploiting":[33],"educating":[37],"researching,":[39],"enabling":[41],"intelligent":[42],"systems":[43],"automatic":[45],"diagnosis":[46],"or":[47,73],"phenotype-genotype":[48],"association":[49],"study.":[50],"This":[51],"paper":[52],"proposes":[53],"an":[54,128],"open-source":[55,129],"web":[56],"framework,":[57],"OpenHI,":[58],"whole-slide":[61,111,141],"image":[62,167],"annotation.":[63],"The":[64,156],"proposed":[65],"framework":[66,105,130,157],"could":[67],"be":[68,134],"utilized":[69],"simultaneous":[71],"collaborative":[72],"crowd-sourcing":[74],"annotation":[75,119,139],"with":[76,146],"standardized":[77],"semantic":[78],"enrichment":[79],"at":[80,154],"pixel-level":[82],"precision.":[83],"Meanwhile,":[84],"our":[85],"accurate":[86],"virtual":[87],"magnification":[88],"indicator":[89],"provides":[90],"annotators":[91],"crucial":[93],"reference":[94],"deciding":[96],"grading":[98],"each":[100],"region.":[101],"In":[102],"testing,":[103],"can":[106,133],"responsively":[107],"annotate":[108],"acquired":[110],"from":[113,143],"TCGA":[114],"project":[115],"provide":[117],"efficient":[118],"which":[120],"is":[121,127,151],"precise":[122],"semantically":[124],"meaningful.":[125],"OpenHI":[126],"thus":[131],"it":[132],"extended":[135],"to":[136],"support":[137],"different":[144,147],"source":[145],"oncological":[148],"types.":[149],"It":[150],"publicly":[152],"available":[153],"https://gitlab.com/BioAI/OpenHI/.":[155],"may":[158],"facilitate":[159],"creation":[161],"large-scale":[163],"precisely":[164],"annotated":[165],"histopathological":[166],"datasets.":[168]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}