{"id":"https://openalex.org/W2914367449","doi":"https://doi.org/10.1109/bibm.2018.8621369","title":"Knowledge Base Commons (KBCommons) v1.0: A multi OMICS' web-based data integration framework for biological discoveries","display_name":"Knowledge Base Commons (KBCommons) v1.0: A multi OMICS' web-based data integration framework for biological discoveries","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2914367449","doi":"https://doi.org/10.1109/bibm.2018.8621369","mag":"2914367449"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2018.8621369","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621369","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103082007","display_name":"Shuai Zeng","orcid":"https://orcid.org/0000-0001-7632-427X"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Shuai Zeng","raw_affiliation_strings":["Electrical Engineering and Computer Science, University of Missouri-Columbia, Columbia, USA"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, University of Missouri-Columbia, Columbia, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013248529","display_name":"Zhen Lyu","orcid":null},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhen Lyu","raw_affiliation_strings":["Electrical Engineering and Computer Science, University of Missouri-Columbia, Columbia, USA"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, University of Missouri-Columbia, Columbia, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058633340","display_name":"Siva Ratna Kumari Narisetti","orcid":"https://orcid.org/0000-0002-2527-4978"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Siva Ratna Kumari Narisetti","raw_affiliation_strings":["Electrical Engineering and Computer Science, University of Missouri-Columbia, Columbia, USA"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, University of Missouri-Columbia, Columbia, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082428303","display_name":"Dong Xu","orcid":"https://orcid.org/0000-0002-4809-0514"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dong Xu","raw_affiliation_strings":["Electrical Engineering and Computer Science, University of Missouri-Columbia, Columbia, USA"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, University of Missouri-Columbia, Columbia, USA","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071079252","display_name":"Trupti Joshi","orcid":"https://orcid.org/0000-0001-8944-4924"},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Trupti Joshi","raw_affiliation_strings":["Electrical Engineering and Computer Science, University of Missouri-Columbia, Columbia, USA"],"affiliations":[{"raw_affiliation_string":"Electrical Engineering and Computer Science, University of Missouri-Columbia, Columbia, USA","institution_ids":["https://openalex.org/I76835614"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5103082007"],"corresponding_institution_ids":["https://openalex.org/I76835614"],"apc_list":null,"apc_paid":null,"fwci":1.0111,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.76408787,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"42","issue":null,"first_page":"589","last_page":"594"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9873999953269958,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7020305395126343},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.6360886693000793},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5259937047958374},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5254182815551758},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5051022171974182},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.498960018157959},{"id":"https://openalex.org/keywords/organism","display_name":"Organism","score":0.4930228888988495},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.4611608684062958},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.45959246158599854},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4352304935455322},{"id":"https://openalex.org/keywords/web-resource","display_name":"Web resource","score":0.43079617619514465},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.41916030645370483},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.21911534667015076},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10088518261909485}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7020305395126343},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.6360886693000793},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5259937047958374},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5254182815551758},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5051022171974182},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.498960018157959},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.4930228888988495},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.4611608684062958},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.45959246158599854},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4352304935455322},{"id":"https://openalex.org/C65603577","wikidata":"https://www.wikidata.org/wiki/Q3427877","display_name":"Web resource","level":2,"score":0.43079617619514465},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.41916030645370483},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.21911534667015076},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10088518261909485},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2018.8621369","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621369","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5099999904632568,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1966327575","https://openalex.org/W2043398720","https://openalex.org/W2043701535","https://openalex.org/W2076372724","https://openalex.org/W2090950329","https://openalex.org/W2097706568","https://openalex.org/W2098425296","https://openalex.org/W2103384241","https://openalex.org/W2105781815","https://openalex.org/W2114104545","https://openalex.org/W2137015675","https://openalex.org/W2137526110","https://openalex.org/W2141458291","https://openalex.org/W2158266834","https://openalex.org/W2158714788","https://openalex.org/W2159482845","https://openalex.org/W2224056471","https://openalex.org/W2235409271","https://openalex.org/W2329659234","https://openalex.org/W2529193383","https://openalex.org/W2610493035","https://openalex.org/W4294216483","https://openalex.org/W6674647444"],"related_works":["https://openalex.org/W1986001501","https://openalex.org/W1504819070","https://openalex.org/W2394072345","https://openalex.org/W2988102712","https://openalex.org/W1501592941","https://openalex.org/W2805259584","https://openalex.org/W4237172707","https://openalex.org/W2773594083","https://openalex.org/W3018845829","https://openalex.org/W4378640007"],"abstract_inverted_index":{"Knowledge":[0],"Base":[1],"Commons":[2],"(KBCommons)":[3],"v1.0":[4],"provides":[5,36,95],"a":[6,37,43,70,96,110],"comprehensive":[7],"web":[8,112],"resource":[9],"for":[10,25,41,102],"storing,":[11],"sharing,":[12],"analyzing,":[13],"exploring,":[14],"and":[15,19,31,55,61,91,105],"visualizing":[16],"multi-organism":[17],"genomics":[18],"multi-omics":[20],"data.":[21],"KBCommons":[22,108,132],"is":[23],"designed":[24],"integrating":[26],"diverse":[27],"multi-level":[28],"omics":[29,53],"data":[30,54,64,72,82,106,127],"facilitating":[32],"biological":[33],"discoveries.":[34],"It":[35,68,93],"one-stop":[38],"shop":[39],"framework":[40],"creating":[42],"new":[44],"organism-specific":[45],"or":[46,85,128],"disease-specific":[47],"knowledge":[48],"base":[49],"(KB),":[50],"adding":[51],"more":[52],"genome":[56],"versions":[57],"to":[58,76,79,86,117],"existing":[59],"KBs":[60],"exploring":[62],"genomic":[63,120],"within":[65],"current":[66],"KBs.":[67],"has":[69,109],"secure":[71],"privilege":[73],"management":[74],"system":[75],"enable":[77],"users":[78,116],"make":[80],"their":[81],"publicly":[83,135],"available":[84],"share":[87],"with":[88],"certain":[89],"groups":[90],"members.":[92],"also":[94],"suite":[97],"of":[98],"interactive":[99],"web-based":[100],"tools":[101],"bioinformatics":[103],"analysis":[104,129],"visualization.":[107],"user-friendly":[111],"interface,":[113],"which":[114],"allows":[115],"retrieve":[118],"entire":[119],"data,":[121],"as":[122,124],"well":[123],"any":[125],"experiment":[126],"results":[130],"easily.":[131],"can":[133],"be":[134],"accessed":[136],"at":[137],"http://kbcommons.org/.":[138]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
