{"id":"https://openalex.org/W2913316982","doi":"https://doi.org/10.1109/bibm.2018.8621269","title":"Annotating Cohort Data Elements with OHDSI Common Data Model to Promote Research Reproducibility","display_name":"Annotating Cohort Data Elements with OHDSI Common Data Model to Promote Research Reproducibility","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2913316982","doi":"https://doi.org/10.1109/bibm.2018.8621269","mag":"2913316982"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2018.8621269","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621269","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023303733","display_name":"Yiqing Zhao","orcid":"https://orcid.org/0000-0003-2874-8136"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yiqing Zhao","raw_affiliation_strings":["Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080116611","display_name":"Yanshan Wang","orcid":"https://orcid.org/0000-0003-4433-7839"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yanshan Wang","raw_affiliation_strings":["Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026192603","display_name":"Henry E. Wang","orcid":"https://orcid.org/0000-0002-4738-0093"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Henry Wang","raw_affiliation_strings":["Department of Computer Science, Princeton University, Princeton, NJ, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110875174","display_name":"Benjamin C. Yan","orcid":null},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin Yan","raw_affiliation_strings":["Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087033178","display_name":"Feichen Shen","orcid":"https://orcid.org/0000-0002-7803-2331"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Feichen Shen","raw_affiliation_strings":["Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027508234","display_name":"Kevin J. Peterson","orcid":"https://orcid.org/0000-0002-9758-4609"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin J. Peterson","raw_affiliation_strings":["Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030579684","display_name":"Walter A. Rocca","orcid":"https://orcid.org/0000-0002-1832-7664"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Walter A. Rocca","raw_affiliation_strings":["Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073303043","display_name":"Jennifer L. St. Sauver","orcid":"https://orcid.org/0000-0002-9789-8544"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jennifer St. Sauver","raw_affiliation_strings":["Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101585391","display_name":"Hongfang Liu","orcid":"https://orcid.org/0000-0003-2570-3741"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongfang Liu","raw_affiliation_strings":["Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research Mayo Clinic, Rochester, MN, USA","institution_ids":["https://openalex.org/I4210146710"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5023303733"],"corresponding_institution_ids":["https://openalex.org/I4210146710"],"apc_list":null,"apc_paid":null,"fwci":0.3216,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.64254973,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1310","last_page":"1317"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12246","display_name":"Chronic Disease Management Strategies","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12246","display_name":"Chronic Disease Management Strategies","score":0.9959999918937683,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14400","display_name":"Medical Coding and Health Information","score":0.9606999754905701,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/standardization","display_name":"Standardization","score":0.7053947448730469},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6617386341094971},{"id":"https://openalex.org/keywords/observational-study","display_name":"Observational study","score":0.5560994148254395},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.5413506031036377},{"id":"https://openalex.org/keywords/cohort","display_name":"Cohort","score":0.5407573580741882},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5192375779151917},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.47607794404029846},{"id":"https://openalex.org/keywords/traceability","display_name":"Traceability","score":0.45417520403862},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.391762912273407},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.31766971945762634},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.13940462470054626},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1267482340335846},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.09158873558044434}],"concepts":[{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.7053947448730469},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6617386341094971},{"id":"https://openalex.org/C23131810","wikidata":"https://www.wikidata.org/wiki/Q818574","display_name":"Observational study","level":2,"score":0.5560994148254395},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.5413506031036377},{"id":"https://openalex.org/C72563966","wikidata":"https://www.wikidata.org/wiki/Q1303415","display_name":"Cohort","level":2,"score":0.5407573580741882},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5192375779151917},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.47607794404029846},{"id":"https://openalex.org/C153876917","wikidata":"https://www.wikidata.org/wiki/Q899704","display_name":"Traceability","level":2,"score":0.45417520403862},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.391762912273407},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.31766971945762634},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.13940462470054626},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1267482340335846},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.09158873558044434},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2018.8621269","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621269","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5,"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306143","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W23901004","https://openalex.org/W202860122","https://openalex.org/W1126991912","https://openalex.org/W1508977358","https://openalex.org/W1863753810","https://openalex.org/W1964000708","https://openalex.org/W1987093317","https://openalex.org/W2020796407","https://openalex.org/W2025914690","https://openalex.org/W2032530009","https://openalex.org/W2063317751","https://openalex.org/W2080656905","https://openalex.org/W2088263677","https://openalex.org/W2088562998","https://openalex.org/W2107879810","https://openalex.org/W2110703451","https://openalex.org/W2113865982","https://openalex.org/W2114847203","https://openalex.org/W2116789248","https://openalex.org/W2118982023","https://openalex.org/W2120242446","https://openalex.org/W2120441632","https://openalex.org/W2124478641","https://openalex.org/W2124785215","https://openalex.org/W2130669423","https://openalex.org/W2137389079","https://openalex.org/W2138278593","https://openalex.org/W2151868700","https://openalex.org/W2152348310","https://openalex.org/W2152449788","https://openalex.org/W2159985898","https://openalex.org/W2164205487","https://openalex.org/W2164572080","https://openalex.org/W2164755477","https://openalex.org/W2167430033","https://openalex.org/W2211265183","https://openalex.org/W2251794424","https://openalex.org/W2302501749","https://openalex.org/W2409717771","https://openalex.org/W2411927251","https://openalex.org/W2524706247","https://openalex.org/W2599076725","https://openalex.org/W2971629451","https://openalex.org/W3199192343","https://openalex.org/W4294116629","https://openalex.org/W6627291559","https://openalex.org/W6657110915","https://openalex.org/W6677348278","https://openalex.org/W6680744245","https://openalex.org/W6683858747","https://openalex.org/W6697856287","https://openalex.org/W6767662938","https://openalex.org/W6801611685","https://openalex.org/W6816417387"],"related_works":["https://openalex.org/W2378767206","https://openalex.org/W2378709054","https://openalex.org/W4380301954","https://openalex.org/W1540871478","https://openalex.org/W328308450","https://openalex.org/W282641168","https://openalex.org/W2803090313","https://openalex.org/W2376963063","https://openalex.org/W2066396794","https://openalex.org/W2366734808"],"abstract_inverted_index":{"Rapid":[0],"increase":[1],"in":[2,16],"the":[3,17,67,79,94,102,106,112,133,139,150],"implementation":[4],"of":[5,19,105,138,184],"electronic":[6],"health":[7],"records":[8],"(EHRs)":[9],"has":[10],"led":[11],"to":[12,33,88,175],"an":[13],"unprecedented":[14],"expansion":[15],"availability":[18],"dense":[20],"longitudinal":[21],"cohort":[22,90,121,145,185],"datasets":[23],"for":[24,40,156,181],"clinical":[25,42,166],"studies.":[26],"However,":[27],"there":[28],"is":[29,142],"a":[30,62,179],"growing":[31],"need":[32],"ensure":[34],"data":[35,46,51,91,103,157],"traceability,":[36],"validity,":[37],"and":[38,57,84,165,188],"reproducibility":[39],"EHR-based":[41],"research.":[43],"Applying":[44],"common":[45],"models":[47],"that":[48,132,141,149],"standardize":[49],"EHR":[50,164],"elements":[52,92],"could":[53],"reduce":[54],"research":[55,59],"discrepancies":[56],"improve":[58],"reproducibility.":[60],"As":[61],"pilot":[63],"study,":[64],"we":[65,119],"utilized":[66],"Observational":[68,80],"Medical":[69],"Outcomes":[70],"Partnership":[71],"(OMOP)":[72],"Common":[73],"Data":[74,82],"Model":[75],"(CDM)":[76],"developed":[77],"by":[78,109],"Health":[81],"Sciences":[83],"Informatics":[85],"(OHDSI)":[86],"community":[87],"annotate":[89],"from":[93,114,163],"local":[95],"Rochester":[96],"Epidemiology":[97],"Project":[98],"(REP).":[99],"We":[100],"evaluated":[101],"coverage":[104],"OMOP":[107,127,134,151,169],"CDM":[108,135,152,170],"manually":[110],"annotating":[111],"cohorts":[113],"92":[115],"REP":[116],"publications.":[117],"Next,":[118],"examined":[120],"similarities":[122],"between":[123],"different":[124],"publications":[125],"using":[126],"elements.":[128],"Evaluation":[129],"results":[130],"showed":[131],"covers":[136],"99.8%":[137],"content":[140],"associated":[143],"with":[144],"attributes.":[146],"It":[147],"demonstrated":[148],"can":[153],"be":[154,176],"used":[155,177],"element":[158],"standardization":[159],"when":[160],"extracting":[161],"information":[162],"registries.":[167],"The":[168],"also":[171],"shows":[172],"its":[173],"potential":[174],"as":[178],"tool":[180],"retrospective":[182],"examination":[183],"definition":[186],"consistencies":[187],"epidemiology":[189],"model":[190],"similarities.":[191]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2025-11-25T21:42:39.735039","created_date":"2025-10-10T00:00:00"}
