{"id":"https://openalex.org/W2911833978","doi":"https://doi.org/10.1109/bibm.2018.8621204","title":"TSGOE: A web tool for tissue-specific gene ontology enrichment","display_name":"TSGOE: A web tool for tissue-specific gene ontology enrichment","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2911833978","doi":"https://doi.org/10.1109/bibm.2018.8621204","mag":"2911833978"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2018.8621204","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621204","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084343474","display_name":"Jiajie Peng","orcid":"https://orcid.org/0000-0002-3857-7927"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiajie Peng","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, China","School of Computer Science, Northwestern Polytechnical University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088573829","display_name":"Guilin Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guilin Lu","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, China","School of Computer Science, Northwestern Polytechnical University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102768105","display_name":"Hansheng Xue","orcid":"https://orcid.org/0000-0002-5263-4844"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hansheng Xue","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, China","School of Computer Science, Northwestern Polytechnical University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100453553","display_name":"Tao Wang","orcid":"https://orcid.org/0000-0002-5728-6463"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Wang","raw_affiliation_strings":["School of Computer Science, Harbin Institute of Technology, Harbin, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009944817","display_name":"Xuequn Shang","orcid":"https://orcid.org/0000-0002-7249-8210"},"institutions":[{"id":"https://openalex.org/I17145004","display_name":"Northwestern Polytechnical University","ror":"https://ror.org/01y0j0j86","country_code":"CN","type":"education","lineage":["https://openalex.org/I17145004"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xuequn Shang","raw_affiliation_strings":["School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, China","School of Computer Science, Northwestern Polytechnical University, Xi'an, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi\u2019an, China","institution_ids":["https://openalex.org/I17145004"]},{"raw_affiliation_string":"School of Computer Science, Northwestern Polytechnical University, Xi'an, China","institution_ids":["https://openalex.org/I17145004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.25569948,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"348","issue":null,"first_page":"1266","last_page":"1269"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.8708906173706055},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7173867225646973},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6610581874847412},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5486904978752136},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.48361626267433167},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.4673132598400116},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.40422171354293823},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3842316269874573},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3718600869178772},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3357210159301758},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19402071833610535},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10211339592933655},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.07211184501647949}],"concepts":[{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.8708906173706055},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7173867225646973},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6610581874847412},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5486904978752136},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.48361626267433167},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.4673132598400116},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.40422171354293823},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3842316269874573},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3718600869178772},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3357210159301758},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19402071833610535},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10211339592933655},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.07211184501647949},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2018.8621204","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621204","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1490161904","https://openalex.org/W1527927437","https://openalex.org/W1533942137","https://openalex.org/W1538643690","https://openalex.org/W2018838463","https://openalex.org/W2095521407","https://openalex.org/W2096561521","https://openalex.org/W2110065044","https://openalex.org/W2614701255","https://openalex.org/W2744684750","https://openalex.org/W2776531206","https://openalex.org/W2792440843","https://openalex.org/W2796725206","https://openalex.org/W2949475756","https://openalex.org/W4231824804","https://openalex.org/W7010006302"],"related_works":["https://openalex.org/W2382997850","https://openalex.org/W2390968135","https://openalex.org/W2003333417","https://openalex.org/W2382213751","https://openalex.org/W2351750670","https://openalex.org/W1597848696","https://openalex.org/W2354715126","https://openalex.org/W2388563748","https://openalex.org/W2375179084","https://openalex.org/W2794019507"],"abstract_inverted_index":{"Gene":[0],"Ontology":[1],"(GO)":[2],"is":[3,32,129],"one":[4],"of":[5,33,41,98],"the":[6,13,38,96],"most":[7],"popular":[8],"Bioinformatics":[9],"resources":[10],"for":[11,26,36],"studying":[12],"functional":[14],"relationships":[15],"between":[16],"genes.":[17],"GO":[18,45,83,124],"enrichment":[19,46,84,125],"analysis":[20,47,85,126],"has":[21],"become":[22],"a":[23],"routine":[24],"method":[25],"gene":[27,59,111],"function":[28],"analysis,":[29],"and":[30,56],"it":[31],"great":[34],"significance":[35],"revealing":[37],"molecular":[39],"mechanism":[40],"biology.":[42],"However,":[43],"existing":[44],"tools":[48],"do":[49],"not":[50],"take":[51],"into":[52],"account":[53],"tissue":[54,81],"specificity":[55],"cannot":[57],"distinguish":[58],"sets":[60],"that":[61,117],"users":[62,78],"interested.":[63],"In":[64],"this":[65],"paper,":[66],"we":[67,105],"propose":[68],"an":[69],"easy-to-use":[70],"web":[71],"application,":[72],"termed":[73],"as":[74],"TSGOE,":[75],"which":[76],"allows":[77],"to":[79,94],"perform":[80,120],"specific-based":[82],"conveniently.":[86],"Besides,":[87],"TSGOE":[88,107,128],"also":[89],"provides":[90],"rigorous":[91],"statistical":[92],"testing":[93],"improve":[95],"reliability":[97],"analytical":[99],"result.":[100],"To":[101],"evaluate":[102],"its":[103],"performance,":[104],"apply":[106],"on":[108],"several":[109],"cancer-related":[110],"lists.":[112],"The":[113],"experimental":[114],"results":[115],"show":[116],"our":[118],"tool":[119],"better":[121],"than":[122],"traditional":[123],"method.":[127],"available":[130],"at":[131],"http://120.77.47.2:5678.":[132]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
