{"id":"https://openalex.org/W2914006007","doi":"https://doi.org/10.1109/bibm.2018.8621181","title":"Software framework for similarity-based prediction of protein interfaces","display_name":"Software framework for similarity-based prediction of protein interfaces","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2914006007","doi":"https://doi.org/10.1109/bibm.2018.8621181","mag":"2914006007"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2018.8621181","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621181","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089273107","display_name":"Jan Jel\u0131\u0301nek","orcid":"https://orcid.org/0000-0001-9720-1885"},"institutions":[{"id":"https://openalex.org/I21250087","display_name":"Charles University","ror":"https://ror.org/024d6js02","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21250087"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jan Jelinek","raw_affiliation_strings":["Department of Software Engineering, Charles University, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Charles University, Prague, Czech Republic","institution_ids":["https://openalex.org/I21250087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051837585","display_name":"Petr \u0160koda","orcid":"https://orcid.org/0000-0002-2732-9370"},"institutions":[{"id":"https://openalex.org/I21250087","display_name":"Charles University","ror":"https://ror.org/024d6js02","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21250087"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Petr Skoda","raw_affiliation_strings":["Department of Software Engineering, Charles University, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Charles University, Prague, Czech Republic","institution_ids":["https://openalex.org/I21250087"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049617942","display_name":"David Hoksza","orcid":"https://orcid.org/0000-0003-4679-0557"},"institutions":[{"id":"https://openalex.org/I21250087","display_name":"Charles University","ror":"https://ror.org/024d6js02","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21250087"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"David Hoksza","raw_affiliation_strings":["Department of Software Engineering, Charles University, Prague, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, Charles University, Prague, Czech Republic","institution_ids":["https://openalex.org/I21250087"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13644438,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"2759","last_page":"2761"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7932347059249878},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5750390291213989},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5690242052078247},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.5104979276657104},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4254534840583801},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38610321283340454},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3340736925601959},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27070385217666626},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.20228877663612366},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09794053435325623}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7932347059249878},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5750390291213989},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5690242052078247},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.5104979276657104},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4254534840583801},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38610321283340454},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3340736925601959},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27070385217666626},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.20228877663612366},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09794053435325623},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2018.8621181","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621181","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.41999998688697815}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309872","display_name":"Grantov\u00e1 Agentura, Univerzita Karlova","ror":"https://ror.org/024d6js02"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1973231190","https://openalex.org/W2014499409","https://openalex.org/W2072284383","https://openalex.org/W2141627824","https://openalex.org/W2147974023","https://openalex.org/W2151311229","https://openalex.org/W2771322141"],"related_works":["https://openalex.org/W2375480909","https://openalex.org/W2353314428","https://openalex.org/W2012019886","https://openalex.org/W2166090428","https://openalex.org/W2381021552","https://openalex.org/W2354749003","https://openalex.org/W2377121353","https://openalex.org/W2961085424","https://openalex.org/W2350529538","https://openalex.org/W2076713575"],"abstract_inverted_index":{"Despite":[0],"the":[1,28],"importance":[2],"of":[3,22,42,51],"protein-protein":[4,43],"interactions":[5],"in":[6],"biological":[7],"processes":[8],"and":[9],"despite":[10],"intensive":[11],"efforts":[12],"to":[13,26,62],"predict":[14,27],"them,":[15],"there":[16],"exists":[17],"only":[18],"a":[19,35,48],"limited":[20],"number":[21],"available":[23,75],"computational":[24],"tools":[25],"interactions.":[29],"In":[30],"this":[31],"paper,":[32],"we":[33],"introduce":[34],"novel":[36],"standalone":[37],"software":[38],"framework":[39,72],"for":[40],"prediction":[41],"interaction":[44],"sites":[45],"which":[46],"suits":[47],"wider":[49],"range":[50],"usecases":[52],"then":[53],"typically":[54],"possible":[55],"with":[56],"similar":[57],"tools.":[58],"This":[59],"allows":[60],"users":[61],"choose":[63],"an":[64],"optimal":[65],"tool":[66],"fitting":[67],"their":[68],"use":[69],"case.":[70],"The":[71],"is":[73],"publicly":[74],"at":[76],"https://github.com/Jelinek-J/INSPiRE.":[77]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
