{"id":"https://openalex.org/W2911396734","doi":"https://doi.org/10.1109/bibm.2018.8621143","title":"Effects from structure of Metabarcode Sequences on Lossy Analysis of Microbiome Data","display_name":"Effects from structure of Metabarcode Sequences on Lossy Analysis of Microbiome Data","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2911396734","doi":"https://doi.org/10.1109/bibm.2018.8621143","mag":"2911396734"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2018.8621143","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621143","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061684236","display_name":"David Molik","orcid":"https://orcid.org/0000-0003-3192-6538"},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David C. Molik","raw_affiliation_strings":["Biological Sciences, University of Notre Dame, Notre Dame, USA"],"affiliations":[{"raw_affiliation_string":"Biological Sciences, University of Notre Dame, Notre Dame, USA","institution_ids":["https://openalex.org/I107639228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006579295","display_name":"Michael E. Pfrender","orcid":"https://orcid.org/0000-0001-6861-0655"},"institutions":[{"id":"https://openalex.org/I107639228","display_name":"University of Notre Dame","ror":"https://ror.org/00mkhxb43","country_code":"US","type":"education","lineage":["https://openalex.org/I107639228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael E. Pfrender","raw_affiliation_strings":["Biological Sciences, University of Notre Dame, Notre Dame, USA"],"affiliations":[{"raw_affiliation_string":"Biological Sciences, University of Notre Dame, Notre Dame, USA","institution_ids":["https://openalex.org/I107639228"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019857186","display_name":"Scott Emrich","orcid":"https://orcid.org/0000-0002-5741-4517"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]},{"id":"https://openalex.org/I2802706902","display_name":"Knoxville College","ror":"https://ror.org/02bxrp522","country_code":"US","type":"education","lineage":["https://openalex.org/I2802706902"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott J. Emrich","raw_affiliation_strings":["Elec. Eng. and Comp. Sci., University of Tennessee - Knoxville, Knoxville, USA"],"affiliations":[{"raw_affiliation_string":"Elec. Eng. and Comp. Sci., University of Tennessee - Knoxville, Knoxville, USA","institution_ids":["https://openalex.org/I2802706902","https://openalex.org/I75027704"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5061684236"],"corresponding_institution_ids":["https://openalex.org/I107639228"],"apc_list":null,"apc_paid":null,"fwci":0.1906,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.62105926,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2","issue":null,"first_page":"1832","last_page":"1837"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/barcode","display_name":"Barcode","score":0.6000002026557922},{"id":"https://openalex.org/keywords/lossy-compression","display_name":"Lossy compression","score":0.5923340916633606},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5265631675720215},{"id":"https://openalex.org/keywords/occupancy","display_name":"Occupancy","score":0.44804346561431885},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphism","display_name":"Single-nucleotide polymorphism","score":0.43033555150032043},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4030284583568573},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38111811876296997},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3372344374656677},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.33513134717941284},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22329536080360413},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2137298882007599},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.15983885526657104},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10539579391479492}],"concepts":[{"id":"https://openalex.org/C2776841711","wikidata":"https://www.wikidata.org/wiki/Q856","display_name":"Barcode","level":2,"score":0.6000002026557922},{"id":"https://openalex.org/C165021410","wikidata":"https://www.wikidata.org/wiki/Q55564","display_name":"Lossy compression","level":2,"score":0.5923340916633606},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5265631675720215},{"id":"https://openalex.org/C160331591","wikidata":"https://www.wikidata.org/wiki/Q7075743","display_name":"Occupancy","level":2,"score":0.44804346561431885},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.43033555150032043},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4030284583568573},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38111811876296997},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3372344374656677},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.33513134717941284},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22329536080360413},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2137298882007599},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.15983885526657104},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10539579391479492},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm.2018.8621143","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621143","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.5899999737739563}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W56988509","https://openalex.org/W1488156261","https://openalex.org/W1881066983","https://openalex.org/W2003347102","https://openalex.org/W2018213620","https://openalex.org/W2034970874","https://openalex.org/W2072970694","https://openalex.org/W2093634337","https://openalex.org/W2093830129","https://openalex.org/W2101601160","https://openalex.org/W2110732100","https://openalex.org/W2113679889","https://openalex.org/W2124351063","https://openalex.org/W2127602818","https://openalex.org/W2149415648","https://openalex.org/W2158198661","https://openalex.org/W2162527419","https://openalex.org/W2163830511","https://openalex.org/W2174316710","https://openalex.org/W2519300105","https://openalex.org/W2519890620","https://openalex.org/W2607519009","https://openalex.org/W2696702828","https://openalex.org/W2754769271","https://openalex.org/W2756617067","https://openalex.org/W2761430568","https://openalex.org/W2762420998","https://openalex.org/W2788882023","https://openalex.org/W2803627098","https://openalex.org/W2950150251","https://openalex.org/W2951160681","https://openalex.org/W2951540755","https://openalex.org/W2962760297","https://openalex.org/W6726859892","https://openalex.org/W6736726897","https://openalex.org/W6744945688","https://openalex.org/W6752128473"],"related_works":["https://openalex.org/W2256570403","https://openalex.org/W2074156223","https://openalex.org/W4391927655","https://openalex.org/W2103246366","https://openalex.org/W2901653204","https://openalex.org/W2102526470","https://openalex.org/W2613659923","https://openalex.org/W4378447789","https://openalex.org/W3207557903","https://openalex.org/W1980504858"],"abstract_inverted_index":{"The":[0],"advent":[1],"of":[2,12,30,83,95],"next-generation":[3],"barcode":[4],"sequencing":[5],"has":[6],"allowed":[7],"for":[8],"more":[9],"high-throughput":[10],"determination":[11],"which":[13,20],"species":[14,32,100],"live":[15],"within":[16,66,89],"an":[17],"area.":[18],"Relationships,":[19],"are":[21,25,61],"a":[22,54],"computed":[23],"distance,":[24],"determined":[26],"by":[27,63],"inferred":[28,102],"occupancy":[29],"the":[31,47,81,90,93],"in":[33,58],"one":[34],"location":[35],"relative":[36],"to":[37],"another.":[38],"Here":[39],"we":[40],"establish":[41],"that":[42,80],"two":[43],"analysis":[44],"methods,":[45],"namely":[46],"established":[48],"Operational":[49],"Taxonomic":[50],"Unit":[51],"approach":[52],"and":[53,78,92],"method":[55],"commonly":[56],"found":[57],"alignment,":[59],"kmers,":[60],"affected":[62],"latent":[64,73],"effects":[65,74],"real":[67],"data.":[68],"We":[69],"then":[70],"analyze":[71],"these":[72],"using":[75],"simulated":[76],"data":[77,91],"show":[79],"presence":[82],"Single":[84],"Nucleotide":[85],"Polymorphisms":[86],"(i.e.,":[87],"SNPs)":[88],"number":[94],"sequences":[96],"obtained":[97],"from":[98],"each":[99],"affect":[101],"correlations.":[103]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}