{"id":"https://openalex.org/W2913465350","doi":"https://doi.org/10.1109/bibm.2018.8621078","title":"An Overview of Machine Learning and HPC in Open Sources for Bioinformatics","display_name":"An Overview of Machine Learning and HPC in Open Sources for Bioinformatics","publication_year":2018,"publication_date":"2018-12-01","ids":{"openalex":"https://openalex.org/W2913465350","doi":"https://doi.org/10.1109/bibm.2018.8621078","mag":"2913465350"},"language":"en","primary_location":{"id":"doi:10.1109/bibm.2018.8621078","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621078","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108455747","display_name":"Yin-Te Tsai","orcid":null},"institutions":[{"id":"https://openalex.org/I177918364","display_name":"Providence University","ror":"https://ror.org/03fcpsq87","country_code":"TW","type":"education","lineage":["https://openalex.org/I177918364"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Yin-Te Tsai","raw_affiliation_strings":["Department of Computer Science and Communication Engineering, Providence University, Taichung, Taiwan, 43301, ROC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Communication Engineering, Providence University, Taichung, Taiwan, 43301, ROC","institution_ids":["https://openalex.org/I177918364"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5108455747"],"corresponding_institution_ids":["https://openalex.org/I177918364"],"apc_list":null,"apc_paid":null,"fwci":2.8182,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.90673575,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"2018","issue":null,"first_page":"1338","last_page":"1342"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7768377065658569},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6697275042533875},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5812204480171204},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.5516654849052429},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5100334286689758},{"id":"https://openalex.org/keywords/open-source-software","display_name":"Open source software","score":0.4585750699043274},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.38779786229133606},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.38737139105796814},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3306480646133423},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.12981361150741577},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07345488667488098}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7768377065658569},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6697275042533875},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5812204480171204},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.5516654849052429},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5100334286689758},{"id":"https://openalex.org/C2988343187","wikidata":"https://www.wikidata.org/wiki/Q1130645","display_name":"Open source software","level":3,"score":0.4585750699043274},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.38779786229133606},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.38737139105796814},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3306480646133423},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.12981361150741577},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07345488667488098}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm.2018.8621078","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm.2018.8621078","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"mag:3175652411","is_oa":false,"landing_page_url":"https://jglobal.jst.go.jp/en/detail?JGLOBAL_ID=201902280638288260","pdf_url":null,"source":{"id":"https://openalex.org/S4306512817","display_name":"IEEE Conference Proceedings","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":"IEEE Conference Proceedings","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.44999998807907104,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W410850256","https://openalex.org/W600776211","https://openalex.org/W753012316","https://openalex.org/W1017116093","https://openalex.org/W1988888548","https://openalex.org/W2049725826","https://openalex.org/W2056371537","https://openalex.org/W2060393849","https://openalex.org/W2083842231","https://openalex.org/W2098740506","https://openalex.org/W2099471712","https://openalex.org/W2109701112","https://openalex.org/W2113021982","https://openalex.org/W2120432001","https://openalex.org/W2132536544","https://openalex.org/W2132737349","https://openalex.org/W2147768505","https://openalex.org/W2155893237","https://openalex.org/W2157355837","https://openalex.org/W2157755551","https://openalex.org/W2160815625","https://openalex.org/W2162390675","https://openalex.org/W2163605009","https://openalex.org/W2168231600","https://openalex.org/W2184188583","https://openalex.org/W2271840356","https://openalex.org/W2311607323","https://openalex.org/W2332506150","https://openalex.org/W2384495648","https://openalex.org/W2397186779","https://openalex.org/W2464977781","https://openalex.org/W2494684804","https://openalex.org/W2502949459","https://openalex.org/W2559872089","https://openalex.org/W2580688187","https://openalex.org/W2765678501","https://openalex.org/W2789367970","https://openalex.org/W2790102940","https://openalex.org/W2793110908","https://openalex.org/W2797862701","https://openalex.org/W2810819381","https://openalex.org/W2919115771","https://openalex.org/W2951113132","https://openalex.org/W2963288913","https://openalex.org/W2963905884","https://openalex.org/W2984509121","https://openalex.org/W3143114733","https://openalex.org/W3189823449","https://openalex.org/W4249935458","https://openalex.org/W4293398578","https://openalex.org/W4297789040","https://openalex.org/W4297827580","https://openalex.org/W4320013936","https://openalex.org/W6614148910","https://openalex.org/W6622239757","https://openalex.org/W6626400616","https://openalex.org/W6639805184","https://openalex.org/W6665801690","https://openalex.org/W6679393576","https://openalex.org/W6683722107","https://openalex.org/W6684191040","https://openalex.org/W6684859321","https://openalex.org/W6686207219","https://openalex.org/W6698064614","https://openalex.org/W6702429100","https://openalex.org/W6743460468"],"related_works":["https://openalex.org/W4376877853","https://openalex.org/W1493891899","https://openalex.org/W4250928611","https://openalex.org/W166480398","https://openalex.org/W1612808768","https://openalex.org/W167327709","https://openalex.org/W1977393088","https://openalex.org/W4387839566","https://openalex.org/W4210922265","https://openalex.org/W2288962794"],"abstract_inverted_index":{"With":[0],"development":[1],"of":[2,48,72,81,84],"recent":[3,42],"open":[4,45],"source":[5,46],"software":[6,47],"in":[7],"HPC,":[8],"such":[9],"as":[10],"Hadoop":[11],"project,":[12],"bioinformatics":[13,54,63,88],"applications":[14,64,89],"with":[15],"large":[16],"scale":[17],"biological":[18],"data":[19],"can":[20],"be":[21,66,91],"solved":[22],"more":[23],"efficiently.":[24],"The":[25,56],"emerging":[26],"machine":[27,49,59,85],"learning":[28,50,60,86],"algorithms":[29,61],"are":[30,75],"widely":[31],"adapted":[32],"for":[33,53,62,87],"analysis,":[34],"recognition":[35],"and":[36,51,69],"prediction.":[37],"This":[38],"paper":[39],"will":[40,65,90],"survey":[41],"literatures":[43],"about":[44],"HPC":[52,73],"applications.":[55],"commonly":[57],"used":[58],"summarized":[67],"here,":[68],"the":[70,79],"situations":[71],"adaption":[74],"also":[76],"provided.":[77],"Finally,":[78],"issues":[80],"future":[82],"usages":[83],"included.":[92]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
